BAC Information

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BAC

Clone NameMSMg01-313K18
Chromosome8 (Build37)
Map Location 68,344,247 - 68,344,920
singlet/doubletsinglet
Overlap geneMarch1, LOC100040986
Upstream geneLOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967
Downstream gene1810029B16Rik, Tktl2, Npy5r, Npy1r, BC053440
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-313K18.T7 (MSMg01no313_k18.b1)MSMg01-313K18.TJ (MSMg01no313_k18.g1)
ACCAG435533AG435534
length1,2221,244
length of high quality
(start - end)
673 (87 - 759)---
definitionCHROMAT_FILE: MSMg01no313_k18.b1 PHD_FILE: MSMg01no313_k18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:38 2005CHROMAT_FILE: MSMg01no313_k18.g1 PHD_FILE: MSMg01no313_k18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:55:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCGTATTTNNNNNNNTCATTGGGCCTAAGACTCCANAGGGAGAGGATCCG
CGGAATTCCTTACATTAGAGGTTCCTTTAAAGGTTAGAGTGTAGTTCAGA
AGGCAGAGTTCTTCATTAGAATGCAATGACCCAATGTTCTATCCACAGAA
CTTCTTAAATATGGCAGTATCTTGTCTCTCAATCCCATCTTTTGGGAGAT
GGAGGCAAAACAATAGAAGTTCAAGGTCAAAGTCAAGGTCATGTTTAGAA
TTCAAGGTCAGCCTGAGATATGAAACATTGTCTCAAGATATGTCTTTTCT
TTTCTTTTCTTTTTTTTCTTTTTTCCTTGACATGAGTGACCAGTTAATGC
TTAAGGTAGCTTGTCTTTGGAAATTATTGAAATATATTGGATGAAGGGAC
ACTTTTTACTCAAGTACTCAAGTTTTTGTTTTTCTCTCTCCCCCCCCCCC
CCCAGCTTAGTTTTATTACAGGTGATACAGACGGTCTGATTGCTTTTATG
CAAATCAAAGTTTTCTTTTGAGACATGAAAATCTCGTGGGTGTTAAACAG
ATGGAGAGTAATTAGCCACAAATGAGAAGAAGCATCAATAGTATCTTATA
AAAAGGAAATTTGTTGTACTGGCCTATCACAAAGCATAAGTATACAAACC
TCTCTCCTTAAGTGCTGTCGCCGCCTCTGTGTACACATTTTAATTCTGAG
TAACTCATCTCAGAGTTGACTTCTATAATATCACCTAACATTAATTAGGA
AAATTGTACTTGTCAGTGGTTTTGGATGAATTTGTCTTTGAATTTAAAAG
GACGACTAAGGGTTGCAATTATCTGCTTGAGTATAAATGCCCAAGTGCTG
TGAACAGTTTTTGTCGAATAACAAATCACTGCCCCTGTATAATTGACTTC
TGTTTGAACTACCCAGTGTCCCCTGAATTGTAACTTTTTTAATTATCTAT
TATTCAATACCTGACTTATTTTCCCAATTACCGCTTTTCACTGGCTATGA
TTTTATTCTTCATGTACTTTCTTTCTTTTTATCTTTAAAAAATCTACTCA
ATTTCTTCTTTTTTATCTTCAACTCCATTTATTTTCCTCTTCTTTCTCTT
TAAATTTTACTTTTCTCTTCATCTTTTCTTTTTTTATTTCTTTTCTTATT
CTTTCCTCCTTTAAAAACTCCTATTTCCTCTATTACTGTTATCTTTATTA
CTTCCATCAATAATTTTTTAAC
NCCCATATNNNNNNNAATTGATGGTATGCTGGXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATTAAGCCCCCNCNNANNN
NANNNNNNNNGANANANAAGCCTTTAAAAGNCCNAAACAGAGGNCNCAGG
GGNAGCNCANNCCGGACNCCAGAGAGGGNCNNNNNNANCAGATTCAGAGA
GGTATGATGGNATGAAAGTTANATNTGGATTATTATTTTTAAAGTTTNTG
AAAATAGANAGTAAANATAAGTTGATTTATATNAANTTTTTNNAGTTGGA
TAGATTNNTGAATNTGAAAAANANATNATNATGGAATTTTTAGAAAANTT
NTTGTTNTAATAATATATAAGTNANATTGAGNATAATAAATNNTAAAAGA
NTGTATTTTTTTTTTAATGANGNGNANAANANNTNNATNANAGAAAGGAN
AAAAAANGATTTTTTTTTTTCACCCCCCCGAGNGAAAGNNANGACCCAAA
AAAAAAAGGGGGGGGGNNNANNNNNNNNNNNNNNNCNANNCNNNNNANGN
ACACCNAGNANANAAANNAGNNNACAANGGCNNGGCNAAAACACCAGGAC
CAAGAAAGCNAAAAGAAGAAAGCAGGGGACGGAGNNNACAGNNCCAGAAG
AANAGAANCGGNGAGGGGAGACCGGGGGCANAGGGNCAGGAGCAGGAAAC
CAAGAGNNCACAGCCAAAACCAGAAGCANAAAACAAAGAGGACCCACGGG
AAAGGANANGAGNCCCNAAACGACCAAAGCCATGCNCCAGNGACACACNN
CNCAAAACAAGGGCAAAGCCGCNAAACCCCCCAAAGAGGGCCACCAANGG
GGGAAAAAGGGCCAAAGGCCAAAGAACAGGGGGAGGGGGGGGAAACNCAN
NCAAACAANCAAAANNAGNANNAAAGGCNAAAGAAAAGCAAGAGCNAAAG
AAAGAAGAAAANGGGCCGCCGGGAAAAAAAAAAACAAAAAGAANGGGGCA
AACCAGGAGCGNAAAAAAANCCAAGGGAAAAGAAACCCCAAAAAAAGAAA
AANGGGCCAAGCAAAAAGGACAAAAAAGACCAAGGGAAAAGNAAAAGGGG
GGGCCCCAAGGAACCCCAAAAAAAGGGGCCCAAAAAAAAAGAAANGCGGG
GCACAAAGAAAGGAACGCCCNAAAAGAGGGAAAGAGACCCGACAAAAAGA
AAGAAACCGGGGGGGGAAGAGAAGCCAGCCAAAAGGGGGCAGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no313_k18.b1 MSMg01no313_k18.b1 CHROMAT_FILE:
MSMg01no313_k18.b1 PHD_FILE: MSMg01no313_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:55:38 2005
         (673 letters)



>mm_chr8_68344053_68345120
          Length = 1068

 Score = 1071 bits (554), Expect = 0.0
 Identities = 644/682 (94%), Gaps = 17/682 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagtgtagttcagaaggcagagttcttcattagaatgcaatgacccaatgttctatccac 60
           |||||||||||||||||| |||||||| ||||| ||||||||| |||||||||||||| |
Sbjct: 195 gagtgtagttcagaaggcggagttcttgattagcatgcaatgagccaatgttctatcccc 254

                                                                       
Query: 61  agaacttcttaaatatggcagtatcttgtctctcaatcccatcttttgggagatg---ga 117
           |||||| |||||| ||||||||||||||||||||||||||||||||||| |||||   ||
Sbjct: 255 agaactgcttaaacatggcagtatcttgtctctcaatcccatcttttgg-agatgtggga 313

                                                                       
Query: 118 ggcaaaacaatagaagttcaaggtcaaagtcaaggtcatgtttagaattcaaggtcagcc 177
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 314 ggcaaaacaatagaagttcaaggtcaaagtcaaggtcatgcttagaattcaaggtcagcc 373

                                                                       
Query: 178 tgagatatgaaacattgtctcaagata------tgtcttttcttttcttttctttttttt 231
           ||||||||||||||||||||||||| |      | | |||| |||| |||| ||||||||
Sbjct: 374 tgagatatgaaacattgtctcaagacactttttttttttttttttttttttttttttttt 433

                                                                       
Query: 232 cttttttccttgacatgagtgaccagttaatgcttaaggtagcttgtctttggaaattat 291
            ||||||  ||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 434 ttttttt--ttgtcatgagtgaccagttaatgcttaaggtaacttgtctttggaaattat 491

                                                                       
Query: 292 tgaaatatattggatgaagggacactttttactcaagtactcaagtttttgtttttctct 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tgaaatatattggatgaagggacactttttactcaagtactcaagtttttgtttttctct 551

                                                                       
Query: 352 ctccccccccccccccagcttagttttattacaggtgatacagacggtctgattgctttt 411
           |     ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 c-----ccccccccccagcttagttttattacaggtgatacagacggtctgattgctttt 606

                                                                       
Query: 412 atgcaaatcaaagttttcttttgagacatgaaaatctcgtgggtgttaaacagatggaga 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 atgcaaatcaaagttttcttttgagacatgaaaatctcgtgggtgttaaacagatggaga 666

                                                                       
Query: 472 gtaattagccacaaatgagaagaagcatcaatagtatcttataaaaaggaaatttgttgt 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gtaattagccacaaatgagaagaagcatcaatagtatcttataaaaaggaaatttgttgt 726

                                                                       
Query: 532 actggcctatcacaaagcataagtatacaaacctctctccttaagtgctgtcgccgcctc 591
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 actggcctatcacaaagcataagtatacaaacctctctccttaagtgctgtcgccgcctc 786

                                                                       
Query: 592 tgtgtacacattttaattctgagtaactcatctcagagttgacttctataatatcaccta 651
           ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 787 tgtgtgcacattttaattctgagtaactcatctcagagttgacttctttactatcaccta 846

                                 
Query: 652 acattaattaggaaaattgtac 673
           || |||||||||||||||||||
Sbjct: 847 actttaattaggaaaattgtac 868


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1068
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1058
Effective search space:   701454
Effective search space used:   701454
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)