BAC Information

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BAC

Clone NameMSMg01-315D24
Chromosome8 (Build37)
Map Location 78,598,632 - 78,773,800
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039134, Hmox1, Mcm5, Rasd2, LOC675507, LOC384845, LOC666211, LOC100039229, 1700007B14Rik, LOC666036
Downstream geneLOC100039185, EG631594, LOC666226, LOC100039211, LOC384847, Nr3c2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315D24.T7 (MSMg01no315_d24.b1)MSMg01-315D24.TJ (MSMg01no315_d24.g1)
ACCAG435946AG435947
length735750
length of high quality
(start - end)		693 (41 - 733)642 (76 - 717)
definitionCHROMAT_FILE: MSMg01no315_d24.b1 PHD_FILE: MSMg01no315_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:40 2005CHROMAT_FILE: MSMg01no315_d24.g1 PHD_FILE: MSMg01no315_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:56:40 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,598,632 - 78,599,324)(78,773,159 - 78,773,800)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAAAACGCGGAATTCCACT
CCTTCTTATCGTCTCAGTGCTTCTCCTCCAACCTGTATTCTCTACTCTCC
TCCTTACCCTCTCTTCTCTTTTCTTGTTGGAGGTTAAGTTAACCAACATA
TAAACAAACAGCACCATTTCTAATCTAAGCTAGAGAATAAATAAACCGAT
GACCCCACATGACCACACATGACTACACATGACCTCTAACCCCTACTCAT
TTGTTGCTCTTGCTCCTTGCCTCACATCTGCTTTATAGAGTTCATCTACC
AAGGCTCCACTGAAGTGACTTATGTTCAACTGTGTTCAGCTCTGCTACCA
GAAGCAGAATTCTGGCATCATATACAGGATATACCGTGAAGAGAAAAGAA
GACTTATCTCACCCAACAATAACAGCCTGTCTCCTAGAATCATCACCTTG
AGCATTTTCAATGGCTCCCATAGTGAGAAATTCAAAGGTCAGTTTTCAGC
CCATTGTAACCTCAATGCTGTTGCTCACTTTGTCTTCCTGTGGCTTTTGG
ATGATGATGGTTTTCTAGTTTTTCTTCTACCCTTCTGTTGTTACATCTTC
CTTTATTGAGTTTTCCTCTAGTGAACTGAGGCACTGCTCTATTTTTTCTT
TCTTTTTTCTCATCCCCCCTTTCCCTCTCTTTCCAGCACCTATTCACAAG
CTGGCATTAGTGTTTGCACAGAAGTGAAAGCTCTN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTGCCCAATTCCAGGCAATCTAGACAATATAAGGCA
GATTGAGAAGGCCAAAAGAAGTTATAAAATCTTCATTTCCACCATCATAG
ATACATCTGCATTCACATCTTTCCTGCTGTGCTCTATAAAGGAGAGGATG
GGTTGTTACTTTGGAGTTCTTTCAAGTTTGATTATCACATGGCATGTCAA
AATGTCCCGGGAGACTCAGCATAAATCAAATGATGAGTTAAAGGGAATAT
TCTTCCCACATTCACATGGAATACAAGAATGTCAACCACATCCTCTCCAG
ATATATACCTCCCTCCTCTGAGGAAAAAGGATCATGAGAAAAATAATACT
TTCCCTCTGAAGTAAAAGGGCCTCTCTGCACACTAAGCAAGGCATAAAAG
AAGGCAGTCATTTTGTAAGAGCTCTCAACCAGGGAAGCTAAAATGAAGGC
CCTGACCCAGCATTGCTACTGTAGGAGTCCAGCTAAGATGTGCAGCTGGT
GAACCTCATTCATGATCTCCTTGGTTTGGGCTGCAGCGGGAAGGATTAGA
ATGGAATGAAGATGGCATCTGATTCGGGATTACAAGGGTTAGAAGTAAGC
CACTGTTTATGTAGCCGCTGAAAAGCTTAATAGCTAAGTATTTGAACTCT
TGTGTTTGTTTAAAAATTGTGAGAGAACAACATTTTTTTTAGAGATTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_d24.b1 MSMg01no315_d24.b1 CHROMAT_FILE:
MSMg01no315_d24.b1 PHD_FILE: MSMg01no315_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:40 2005
         (693 letters)



>mm_chr8_78598432_78599524
          Length = 1093

 Score = 1239 bits (641), Expect = 0.0
 Identities = 680/693 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattccactccttcttatcgtctcagtgcttctcctccaacctgtattctctactctcc 60
           |||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 gaattccactccttctcatggtctcagtgcttctcctccaacctgtattctctactcttc 260

                                                                       
Query: 61  tccttaccctctcttctcttttcttgttggaggttaagttaaccaacatataaacaaaca 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccttaccctcccttctcttttcttgttggaggttaagttaaccaacatataaacaaaca 320

                                                                       
Query: 121 gcaccatttctaatctaagctagagaataaataaaccgatgaccccacatgaccacacat 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 gcaccatttctaatctaagctagagaataaataaacccatgaccccacatgaccacacat 380

                                                                       
Query: 181 gactacacatgacctctaacccctactcatttgttgctcttgctccttgcctcacatctg 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aactacacatgacctctaacccctactcatttgttgctcttgctccttgcctcacatctg 440

                                                                       
Query: 241 ctttatagagttcatctaccaaggctccactgaagtgacttatgttcaactgtgttcagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctttatagagttcatctaccaaggctccactgaagtgacttatgttcaactgtgttcagc 500

                                                                       
Query: 301 tctgctaccagaagcagaattctggcatcatatacaggatataccgtgaagagaaaagaa 360
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 tctgctaccagaagcagaattctggcatcatatacaggatatacggtgaagagaaaagaa 560

                                                                       
Query: 361 gacttatctcacccaacaataacagcctgtctcctagaatcatcaccttgagcattttca 420
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacttatctcacccaagaataacagcctgtctcctagaatcatcaccttgagcattttca 620

                                                                       
Query: 421 atggctcccatagtgagaaattcaaaggtcagttttcagcccattgtaacctcaatgctg 480
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 atggctcccatagtgagaaattcaaaggtcggttttcagcccattgtaacctcaatgctg 680

                                                                       
Query: 481 ttgctcactttgtcttcctgtggcttttggatgatgatggttttctagtttttcttctac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgctcactttgtcttcctgtggcttttggatgatgatggttttctagtttttcttctac 740

                                                                       
Query: 541 ccttctgttgttacatcttcctttattgagttttcctctagtgaactgaggcactgctct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccttctgttgttacatcttcctttattgagttttcctctagtgaactgaggcactgctct 800

                                                                       
Query: 601 attttttctttcttttttctcatcccccctttccctctctttccagcacctattcacaag 660
           |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
Sbjct: 801 attttttctttcttttttctcatccctcctttccttctctttccagcacctattcacagg 860

                                            
Query: 661 ctggcattagtgtttgcacagaagtgaaagctc 693
           ||||||||| |||||||||||||||||||||||
Sbjct: 861 ctggcattaatgtttgcacagaagtgaaagctc 893


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no315_d24.g1 MSMg01no315_d24.g1 CHROMAT_FILE:
MSMg01no315_d24.g1 PHD_FILE: MSMg01no315_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:56:40 2005
         (642 letters)



>mm_chr8_78772959_78774000
          Length = 1042

 Score = 1195 bits (618), Expect = 0.0
 Identities = 636/642 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggcaatctagacaatataaggcagattgagaaggccaaaagaagttataaaatcttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 caggcaatctagacaatataaggcagattgagaaggccaaaagaagttataaaatcttca 783

                                                                       
Query: 61  tttccaccatcatagatacatctgcattcacatctttcctgctgtgctctataaaggaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 tttccaccatcatagatacatctgcattcacatctttcctgctgtgctctataaaggaga 723

                                                                       
Query: 121 ggatgggttgttactttggagttctttcaagtttgattatcacatggcatgtcaaaatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ggatgggttgttactttggagttctttcaagtttgattatcacatggcatgtcaaaatgt 663

                                                                       
Query: 181 cccgggagactcagcataaatcaaatgatgagttaaagggaatattcttcccacattcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 cccgggagactcagcataaatcaaatgatgagttaaagggaatattcttcccacattcac 603

                                                                       
Query: 241 atggaatacaagaatgtcaaccacatcctctccagatatatacctccctcctctgaggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 atggaatacaagaatgtcaaccacatcctctccagatatatacctccctcctctgaggaa 543

                                                                       
Query: 301 aaaggatcatgagaaaaataatactttccctctgaagtaaaagggcctctctgcacacta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 542 aaaggatcatgagaaaaataatactttccctctgaagtaaaagggcctctctgtagacta 483

                                                                       
Query: 361 agcaaggcataaaagaaggcagtcattttgtaagagctctcaaccagggaagctaaaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agcaaggcataaaagaaggcagtcattttgtaagagctctcaaccagggaagctaaaatg 423

                                                                       
Query: 421 aaggccctgacccagcattgctactgtaggagtccagctaagatgtgcagctggtgaacc 480
           ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 422 aaggccctgacccagcactgctactgtaggagtccagctaaaatgtgcagctggtgaacc 363

                                                                       
Query: 481 tcattcatgatctccttggtttgggctgcagcgggaaggattagaatggaatgaagatgg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 tcattcatgatctccttggtttgggctgcagcgggaaggattagaatggaatgaagatgg 303

                                                                       
Query: 541 catctgattcgggattacaagggttagaagtaagccactgtttatgtagccgctgaaaag 600
           ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 302 catctgactcgggattacaagggttagaagtaagccactgtttatgttgccgctgaaaag 243

                                                     
Query: 601 cttaatagctaagtatttgaactcttgtgtttgtttaaaaat 642
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cttaatagctaagtatttgaactcttgtgtttgtttaaaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space:   652224
Effective search space used:   652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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