BAC Information

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BAC

Clone NameMSMg01-315J01
Chromosome8 (Build37)
Map Location 61,761,331 - 61,761,677
singlet/doubletsinglet
Overlap genenone
Upstream gene4930431L04Rik, BC030500, LOC665116, LOC436042
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315J01.T7 (MSMg01no315_j01.b1)MSMg01-315J01.TJ (MSMg01no315_j01.g1)
ACCAG436172AG436173
length713718
length of high quality
(start - end)
609 (42 - 650)346 (73 - 418)
definitionCHROMAT_FILE: MSMg01no315_j01.b1 PHD_FILE: MSMg01no315_j01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:04 2005CHROMAT_FILE: MSMg01no315_j01.g1 PHD_FILE: MSMg01no315_j01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCACCCGATTACCACTGAATGGCTGAGAAGCACCTGAAAAAATGTTCAA
CATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCAG
CTCACACCAGTCAGAATGGCTAAGATGAAAAATTCCGGTGACAGCAGATG
CTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATT
GCAAGCTTGTACAACCACTCAGGAAATCAATCTGGCGGTTCCTCAGAAAA
TTGGACATAGTACTACCGGAGCATCTAGCAATACCTCTCCTGGGTATATA
TCCAGAAGTTGTCCCAACCCGTAAGAAGGACACATGCTCCACTATGTTCA
TAGCAGCCTTATTTATAACACCCAGAAGCTGGAAAGAACCCAGTTGCCCC
TCAACAGAGGAATGGATACAAAAAAATGTGGTACACTTACACAATGGAGT
ACTATTTAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAAATGG
TTGGACCTGGAGGCATCATCCTGAGTGAGGTAACACAATCACAAAAGAAC
TCAAATGATACATACTCACTGATAAGTGGATATTAGCCCAGAAACTGTAT
ACCCGAGATATAAGATACAATTTGTAAAACACATGAGACTGAAGAAGAAC
GAAGACCAAAGTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTATAAAAAAGTTTCTTCTGTTTCTTGAT
CATAGTTTTTCAATAAATTTCTAAGATGAGACTGTAAGTCTGCAGTTAAT
TTTTCTTGTAAATAAGTAAGTTATATCTGCAGAATAATGTCAGTGTCATC
AGAAAGGATGGAAAATATTCCTTCTTCTTGAAAATACTCTTTTTTAAATT
TAAATTTTATTTTACATACCAGACACAGTTTTATAGATAATATTTTTATT
TATCAAAACAATCTCCATAAAAATGCTTACACAATTCTTCAAAGATAATG
AAAGGGCAATTTTCAAATTCATCTGGAAAAACAAAAAAACAAGAATAATA
AACACAATTCTTGACAATAAACACATTTCTCAAGGAATCATCACCCATTA
TTTCAAGGTATACTATAGTATAATAGTGGTAAAAACTTCCTGGTATTGAT
ACAGAGACAGACATGGAATATAATTGATAACACAGAAATAAAACCATCCG
CTTATAGACACTTGATCTTTGACAAAGTAGGCTAAAATATACTATAGAAA
AAGGAAACCATCTTTTATGAATTGTGGTGGTTGACCTGGCAGTCTCTATG
TACAAAAATTAAAATAGATCCATATTTGTCACCCTTCACATACCTCCTGT
CTAACTGCGTCACGACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_j01.g1 MSMg01no315_j01.g1 CHROMAT_FILE:
MSMg01no315_j01.g1 PHD_FILE: MSMg01no315_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:04 2005
         (346 letters)



>mm_chr8_61761311_61762056
          Length = 746

 Score =  632 bits (327), Expect = 0.0
 Identities = 342/347 (98%), Gaps = 1/347 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tataaaaaagtttcttctgtttcttgatcatagtttttcaataaatttctaagatgagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tataaaaaagtttcttctgtttcttgatcatagtttttcaataaatttctaagatgagac 308

                                                                       
Query: 61  tgtaagtctgcagttaatttttcttgtaaataagtaagttatatctgcagaataatgtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tgtaagtctgcagttaatttttcttgtaaataagtaagttatatctgcagaataatgtca 248

                                                                       
Query: 121 gtgtcatcagaaaggatggaaaatattccttcttcttgaaaatactcttttttaaattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gtgtcatcagaaaggatggaaaatattccttcttcttgaaaatactcttttttaaattta 188

                                                                       
Query: 181 aattttattttacataccagacacagttttatagataatatttttatttatcaaaacaat 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 187 aattttattttacataccagacacagctttatagataatatttttatttatcaaaacaat 128

                                                                       
Query: 241 ctccataaaaatgcttacacaattcttcaaagataatgaaagggcaattttcaaattcat 300
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 ctccataaaaatgccaacacaattcttcaaagataatgaaagggcaattttcaaattcat 68

                                                          
Query: 301 ctggaaaaac-aaaaaaacaagaataataaacacaattcttgacaat 346
           |||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct: 67  ctggaaaaacaaaaaaaacaagaataataaacaaaattcttgacaat 21


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)