BAC Information

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BAC

Clone NameMSMg01-315P19
Chromosome8 (Build37)
Map Location 4,702,479 - 4,702,824
singlet/doubletsinglet
Overlap genenone
Upstream geneClec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223
Downstream geneLOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275, LOC623409, LOC669429
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-315P19.T7 (MSMg01no315_p19.b1)MSMg01-315P19.TJ (MSMg01no315_p19.g1)
ACCAG436468AG436469
length1,787742
length of high quality
(start - end)
---347 (74 - 420)
definitionCHROMAT_FILE: MSMg01no315_p19.b1 PHD_FILE: MSMg01no315_p19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:37 2005CHROMAT_FILE: MSMg01no315_p19.g1 PHD_FILE: MSMg01no315_p19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:57:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCCGGTCAGCTGCGGACTTTCACCTANCGTTACTTTCAGATGAGAT
ACCGGTGCGACATTGCGATACATCACTATCGCATATCACACTCGTGCACT
CGGCGCGCGTGCAGCAGCTGCCGCACGATGTATGTAGCTGAGCGAGCGTN
GCATGAGAGAGATGCTTGAGTAGGCAGTACGCTGACGGATCGACACACAT
CTACTAGCACGCGACGANTGCACACTGATACCCCACTTTGANTAACGCCG
TAGTCGCATCGACTGCGGACGTGCAGTACGCGCAGTGCGTGACGNGATAA
TAGTGCGAGCATCTCGCGAAATGATACGTCACGTGTGCGTGCCGCGTCTA
TATGTACGTGCTGATGCCAGCGACNGCGCACGCGTGCGCATGAGTGATAC
TCACTGCTCGCGAGNTCAGTGATGTGTCAGTATGNCAGCAGCTCACGTCT
CAGACGCACTCATCTGCTGATCTGAGTGCGNGANAGAGAATNTGATATGA
CTAGCCACGCGANCAGTACAGCGCGACAGCGCGCGACGCACCAGAGCGAG
CCGAAGTGCTAGTAGCGANCCGTATTTACCACGACTTCTATATGCTACTA
GTCGTACGCGAGTATGCGATAACGACAACTGCGACGCCNCAGCATGCATA
TACTGAACTCTATACAGTCCGTGAGCGTGACACGTGCGGACTATCGANTG
TGCGGCGTGATAGATACAGCTGATAGCGCGCGACGCATGATGTCGCGTAG
CCAGACACGACGACATAGACAAGTATTATATCAGGCGTGNCGCGCGTTAN
CTCGATGACTCAGATGCGCTGCGTCGATGCTCCGCGACGCGCGNAGGCAG
ATGCTACTGATCTGCTCTACCCCGCACGTACATCACTGCTCGTCGTTGCT
GCGCACGCTCGTGCGCGACTATGTAANTACGAATGATCATCTACGCGCTG
CGCTGCACTATCATCACGTACGCGATANCGATACGCGCCANCCCTGCACA
CGTACNCTGTCGTNANATGCTGCTGCCCGCTATACGCTTTNCGTCGTACA
GCGTATGCCGAGCTNTGTCATGTGCTCATTAGTCAGTGATACGCACTGTC
TATGNCAGCGCTGTCCCNTGATAGTACGTGATGACTATCGATGTAACTGN
CAGCTCTATACGTCTGACATGCATCGGCATCGACGTGCTACGTAGCAGCG
TAGTACTCACGATGCACTTTCTTACGACGCTAGTGCACGTACGAGTAGTC
AGCCTAGANCGTACANCACTACGTCGAACTGNTAGTGACATCTGACTAGA
CTGTACCTCAGTGTTACTACATATACGCTGNTCGCACATGCGTCAGCTCG
CGCGTCTTCCTCATGCGTGACACNACGATGATAGATCGTCTACGCGACTG
CATGTGTCTGTGAGTGTGANCTCACGCTGTCNGAGAGCGACGATGATANT
GCGACATGTTNCGCGCGCATANCGTGTGTCTGTGATNTANGTGCTATCGC
ACTCTGCATTGCGATCGTGAGTACACGACGCACGNCGTCCACGCGNACGC
TGACTGCTGCTGATGTATGATTACGAACGCGCGCGTGATATAGATAGTGA
ATACGATCATGACGTTACTGCTCACGATGTCANGANGANCAGTAGCNTNC
NGATATCACATACTCNACTGCTCGTCNTATCGACAGCAAACGACTCGTCA
TAGAGCGACTGCCGCCTGAGTAGANTATGNTAACGATCATAATTCAATAC
GGTANTCGTGACGACGACGGNATGTCGACGTGCGACG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATCCTTTATTCCAACTCTAAGACATT
GCATTTTGGTAGTATTCTTATTTATATTAACTATCCTAGTGTGATAGATT
GGAAATGATCTTACATACATTCAAAGTAATTTTTTGTTCAAATGGGCAAT
GTACATTGTATTAGGGTTCTCAAGAGCCACAGAACTTATGGATAGTCTCT
CTATAGTAAGGGAATTTGTTATGATGACTTACAGTCTGCAGTCCAGCTCC
CCAACAGTGGTCAGCTGTGAATGGGAAGTCCAAGGATCAGGTGGTTGCTC
AGTCCCACGAGGCTGGTTGTTTCAGCTGGTCTTCTGTAGAAGTAGCTTCC
AGCAGATATGCTGGCAAGCACCCCCCACCAGGTGAAGAATAAATTTTCCT
TCTTCCAATGTCTCTCTTACATTCTTCCCCACATAGGCCCTTCTACTTCT
ATGTCTTTCTGTTGAAATGTAGATTAGGCATAGAAGAGAAAAATGCAACA
TTTGTATTTCTGAGTCTGACCTATTTCACTTAACATGATTTCAATTTGGT
CCCATTTTCTGCAATGATCTGTCACAATTTCACTCTTTTTGTTTTGTTTT
GTTTTGTTTTGTTTTTTGTTTTTGTTTTTTGAGACCGGGTTTCTCTGTGT
AGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no315_p19.g1 MSMg01no315_p19.g1 CHROMAT_FILE:
MSMg01no315_p19.g1 PHD_FILE: MSMg01no315_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:57:37 2005
         (347 letters)



>mm_chr8_4702279_4703026
          Length = 748

 Score =  654 bits (338), Expect = 0.0
 Identities = 344/346 (99%), Gaps = 1/346 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatcctttattccaactctaagacattgcattttggtagtattcttatttatattaacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatcctttattccaactctaagacattgcattttggtagtattcttatttatattaacta 260

                                                                       
Query: 61  tcctagtgtgatagattggaaatgatcttacat-acattcaaagtaattttttgttcaaa 119
           ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 261 tcctagtgtgatagattggaaatgatcttacatcacattcaaagtaatgttttgttcaaa 320

                                                                       
Query: 120 tgggcaatgtacattgtattagggttctcaagagccacagaacttatggatagtctctct 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggcaatgtacattgtattagggttctcaagagccacagaacttatggatagtctctct 380

                                                                       
Query: 180 atagtaagggaatttgttatgatgacttacagtctgcagtccagctccccaacagtggtc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagtaagggaatttgttatgatgacttacagtctgcagtccagctccccaacagtggtc 440

                                                                       
Query: 240 agctgtgaatgggaagtccaaggatcaggtggttgctcagtcccacgaggctggttgttt 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agctgtgaatgggaagtccaaggatcaggtggttgctcagtcccacgaggctggttgttt 500

                                                         
Query: 300 cagctggtcttctgtagaagtagcttccagcagatatgctggcaag 345
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagctggtcttctgtagaagtagcttccagcagatatgctggcaag 546


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 748
Length adjustment: 9
Effective length of query: 338
Effective length of database: 739
Effective search space:   249782
Effective search space used:   249782
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)