Query= MSMg01no316_h09.b1 MSMg01no316_h09.b1 CHROMAT_FILE:
MSMg01no316_h09.b1 PHD_FILE: MSMg01no316_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:13 2005
(530 letters)
>mm_chr8_124618651_124619579
Length = 929
Score = 886 bits (458), Expect = 0.0
Identities = 512/530 (96%), Gaps = 1/530 (0%)
Strand = Plus / Minus
Query: 1 tccgtacattttttcatctccaaatatccaaggttttctgcatgttttatttctctccac 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tccgtaca-tttttcatctccaaatatccaaggttttctgcatgttttatttctctccac 671
Query: 61 acatgatctcagcctcctcttctttgccaaacacacagagtgtgtttctagggctgtttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 acatgatctcagcctcctcttctttgccaaacacacagagtgtgtttctagggctgtttt 611
Query: 121 agcatctctgtctgtgaagtcctgtcacttgatggagttctaatcggttggtctcccact 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 610 agcatctctgtctgtgaagtcctgtcacttgatggagttctaatcggttggtctcccatt 551
Query: 181 gtgggtctttgctttctgcacgtctggttatttttgatggaatgccagctactgggatgt 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gtgagtctttgctttctgcacgtctggttatttttgatggaatgccagctactgggatgt 491
Query: 241 ctatcatgtttctgcggcttctgtcatcctcctgcgcagctctgggccttgtcctgctgg 300
|||||||| |||| |||||||| ||||||||||| |||||||||||||| |||||||||
Sbjct: 490 ctatcatggctctgtggcttctgccatcctcctgcacagctctgggccttatcctgctgg 431
Query: 301 gctgtcacttggcatcaggtccttctgaggcttgtgtatggagcccccagagaagtcttg 360
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 430 gctgtcacttggcatcaggtccttctgaggcttgtgtatggaggggccagagcagtcttg 371
Query: 361 gactaaccctaatttgctatcaatactgagaccatcttctctgaagattcagcctcacac 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ggctaaccctaatttgctatcaatactgagaccatcttctctgaagattcagcctcacac 311
Query: 421 ctgtgtgctctaaggtctctccgcctcgggcggtgggagcgagccacctcagcccccttg 480
|||||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||
Sbjct: 310 ctgtgtgctctaaggtctctccaccttgggtggtgggagcgagccacctcagcccccttg 251
Query: 481 gactgccctttcccagccatcagaagcttcatcacacagcgatcagtccg 530
||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 250 gactgccctttcccagccatcagaaacttcatcacacagcgatcagtccg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 929
Length adjustment: 10
Effective length of query: 520
Effective length of database: 919
Effective search space: 477880
Effective search space used: 477880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no316_h09.g1 MSMg01no316_h09.g1 CHROMAT_FILE:
MSMg01no316_h09.g1 PHD_FILE: MSMg01no316_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:13 2005
(615 letters)
>mm_chr8_124458121_124459135
Length = 1015
Score = 1135 bits (587), Expect = 0.0
Identities = 608/615 (98%)
Strand = Plus / Plus
Query: 1 accaatctacaccttcctggtcaggctcagggatccatccctggacccttctctctaatg 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 accaatctacaccttcctggtcaggctcagggatccatccctggagccttctctctaatg 260
Query: 61 gagatgccctagaaggcatcccacttagctatgaccgtggagggctatcttggagcttgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagatgccctagaaggcatcccacttagctatgaccgtggagggctatcttggagcttgg 320
Query: 121 ggtctgttgagagacacggtagagatcagaaaaatgaggaaggaggcctggctgctgctc 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtctgttgagagacacggtagagaccagaaaaatgaggaaggaggcctggctgctgctc 380
Query: 181 tccttgcctcatttccaggtcacctgtccaggcaggagcctcgattagtctggtgcttcc 240
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 381 tccttgcctcatttccaggtcacctgtccaggcaggagcctccatttgtctggtgcttcc 440
Query: 241 tcttggtttgtttcgtcaggcagggcctttctctgacctgcaactggtgacccctggtgg 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttggtttgttttgtcaggcagggcctttctctgacctgcaactggtgacccctggtgg 500
Query: 301 acagaagtaaaatctgagagctctaagtttacaagctgactctgggagtcaggcctgtgg 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 acagaagtaaaatctgagagctctaagtttacaagctgaccctgggagtcaggcctgtgg 560
Query: 361 tggccagcagcagcagttttggacttgggctcctttgggatctcttggctttggtggcga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggccagcagcagcagttttggacttgggctcctttgggatctcttggctttggtggcga 620
Query: 421 ctgtcagttgtcacctagaggagcagaggccatggtggactgtgaaaatattcggggaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgtcagttgtcacctagaggagcagaggccatggtggactgtgaaaatattcggggaag 680
Query: 481 ttttacaggcaaagcctgggggctctggcagcccccagcaagctaggctcagcccctcct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttacaggcaaagcctgggggctctggcagcccccagcaagctaggctcagcccctcct 740
Query: 541 ccctaaaatcccacttaaagatattttcacagatcatacagagaaaggaactgttttcaa 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccctaaaatcccacttaaagatattttcacagatcatacagagaaaggaactgttttcag 800
Query: 601 tgttgccaacaacca 615
|||||||||||||||
Sbjct: 801 tgttgccaacaacca 815
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
