BAC Information

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BAC

Clone NameMSMg01-316M03
Chromosome8 (Build37)
Map Location 108,865,875 - 109,050,106
singlet/doubletdoublet
Overlap geneZfp90, 6030452D12Rik, Cdh3
Upstream geneFhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3
Downstream geneLOC100042734, Cdh1, Tmco7, Has3, 5830457O10Rik, Cirh1a, EG234703, Sntb2, Vps4a, Cog8, Nip7, Tmed6, Terf2, EG667847, Cyb5b, LOC100042791, Nfat5, Nqo1, Nob1, Wwp2, LOC100042812
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-316M03.T7 (MSMg01no316_m03.b1)MSMg01-316M03.TJ (MSMg01no316_m03.g1)
ACCAG437020AG437021
length732733
length of high quality
(start - end)		688 (45 - 732)587 (76 - 662)
definitionCHROMAT_FILE: MSMg01no316_m03.b1 PHD_FILE: MSMg01no316_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:35 2005CHROMAT_FILE: MSMg01no316_m03.g1 PHD_FILE: MSMg01no316_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:58:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,865,875 - 108,866,558)(109,049,514 - 109,050,106)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTCACTATACCAGGCCAAAGAGAAGGCCCAAATTCCTTGTGGGTTA
TCTACAACTAAAAAACAAGCTGAGGAAGGGGATTCCAAATGGAAAGGTGA
AAACAGAAAGATTTGGAGAAAATCAGAGAATGCTGTGGCCACAGAAGCCA
AAGCTGGGAGTGGGGTGATGCCACACAGGATTAGCAAAGCCAAGCTCTGA
ACTGTCCCTATCCCCAGTGTAGCAACAGGGTCACTGGTGGCCTCGGAAAG
AGTAACTTGATATGAGCTCAGTCTCTGGGAACCACATGGTAGGAGACAGT
ACATCCTAGCAAGCCGGAAGAAAAACACTTTCCTAGCACATGGGAGGGGA
GCAGAGGGGAACTGGACCCAGCCCTGTGTAGTAGGTAGCTTGGCCATTGT
TTCTGCTTCAATACTGGAATCTAGGAGCCCCATGGGAGGAGGATGAGAAG
AATGGAAAATCTGAAGTGAAGAAAATACTAAAGGTAGCTGCTGTGGAAAA
GATAAGAGAACCTAAAAGATCTCCAGAGGCTTCCAGGCAGAAAGAGTTTG
GAGATCACAGGCATGTGGGAATGTCTGAAAACAGGACCTTTCTCCAAACT
TCCACTAGTGCTGGGAAAGGCATAAACAAGTCTGATCTAGAGCTTGACTT
TCTGAGACAGTAAAGAGAATCAAGAGATTTAG

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTTAAAGTCTCCATCCTAGTTTGT
CTTGGATGTACCTTATACAGTGACAGGATTCCGAATGAGGGGTAGACAGC
TCAGGGGAAAGGCACGTGGAACTGACCGGAAAGATCCTGGGACTTTCCTA
AGTAAAGCTGTATGTAGATGAGAAAACAACCCACTGAGAAAGGCTAATTA
AAGGTCAAGTGCTGTGGACTGCTACGGGGAGAGGGGGGAACCAGGCGCTG
CTGTACACTGCTGGGACAGGCAGCAATGGAAACATATTTTTCTATCACTT
AGGAATCCATAAATAAGCCCTTTAGCCCGGGTATGATGCCAGAAACCATC
CCAGGTGTGGTAAAAACCCCACTGGTGACGATCCTCAAGTCTGCTGCTTA
AATAGGAGAAAAAAAGGACTCAATAACCTTTCAATGAATGCTTAATTAGG
CCGTATTACAGGCACTCAAATGTCTACACTACAGCCTCAAATACCATAAA
AGAAACCCCCAAGGGGAACCAGTGCTCTACAAAGCAGAGAAAAGGTCGCA
ATGATCCATTTATAGGACTCCTCCAACAATGCTAACAATTAATTATACAA
TATTAATAGTTTCCCATGGCACAAGTCGGGAGAGACAGAGCCGAGCCCTA
TAACCCCGAAGGCGTCTGAGCTTTGAACCCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no316_m03.b1 MSMg01no316_m03.b1 CHROMAT_FILE:
MSMg01no316_m03.b1 PHD_FILE: MSMg01no316_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:35 2005
         (688 letters)



>mm_chr8_108865671_108866758
          Length = 1088

 Score = 1237 bits (640), Expect = 0.0
 Identities = 673/684 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttcactataccaggccaaagagaaggcccaaattccttgtgggttatctacaac 64
           ||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttcactagaggaggccaaagagaaggcccaaattccttgtgggttatctacaac 264

                                                                       
Query: 65  taaaaaacaagctgaggaaggggattccaaatggaaaggtgaaaacagaaagatttggag 124
           ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct: 265 taaaaaacaagctgaggaaggagattccaaatggaaaggtgagaacagaaagatttggag 324

                                                                       
Query: 125 aaaatcagagaatgctgtggccacagaagccaaagctgggagtggggtgatgccacacag 184
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaatcagaaaatgctgtggccacagaagccaaagctgggagtggggtgatgccacacag 384

                                                                       
Query: 185 gattagcaaagccaagctctgaactgtccctatccccagtgtagcaacagggtcactggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gattagcaaagccaagctctgaactgtccctatccccagtgtagcaacagggtcactggt 444

                                                                       
Query: 245 ggcctcggaaagagtaacttgatatgagctcagtctctgggaaccacatggtaggagaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ggcctcggaaagagtaacttgatatgagctcagtctctgggaaccacatggtaggagaca 504

                                                                       
Query: 305 gtacatcctagcaagccggaagaaaaacactttcctagcacatgggaggggagcagaggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 505 gtacatcctagcaagccggaagaaaaacactttcctagcacatgggaggggaggagaggg 564

                                                                       
Query: 365 gaactggacccagccctgtgtagtaggtagcttggccattgtttctgcttcaatactgga 424
           ||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaactggaggtagccctgtgtagtaggtagcttggccattgtttctgcttcaatactgga 624

                                                                       
Query: 425 atctaggagccccatgggaggaggatgagaagaatggaaaatctgaagtgaagaaaatac 484
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtctaggagccccatgggaggaggatgagaagaatggaaaatctgaagtgaagaaaatac 684

                                                                       
Query: 485 taaaggtagctgctgtggaaaagataagagaacctaaaagatctccagaggcttccaggc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 taaaggtagctgctgtggaaaagataagagaacctaaaagatctccagaggcttccaggc 744

                                                                       
Query: 545 agaaagagtttggagatcacaggcatgtgggaatgtctgaaaacaggacctttctccaaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 agaaagagtttggagatcacaggcatgtgggaatgtctgaaaacaggacctttctccaaa 804

                                                                       
Query: 605 cttccactagtgctgggaaaggcataaacaagtctgatctagagcttgactttctgagac 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cttccactagtgctgggaaaggcataaacaagtctgatctagagcttgactttctgagac 864

                                   
Query: 665 agtaaagagaatcaagagatttag 688
           ||||||||||||||||||||||||
Sbjct: 865 agtaaagagaatcaagagatttag 888


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no316_m03.g1 MSMg01no316_m03.g1 CHROMAT_FILE:
MSMg01no316_m03.g1 PHD_FILE: MSMg01no316_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:58:35 2005
         (587 letters)



>mm_chr8_109049314_109050306
          Length = 993

 Score = 1073 bits (555), Expect = 0.0
 Identities = 581/593 (97%), Gaps = 6/593 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttaaagtctccatcctagtttgtcttggatgtaccttatacagtgacaggattccgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 atttaaagtctccatcctagtttgtcttggatgtaccttatacagtgacaggattccgaa 734

                                                                       
Query: 61  tgaggggt------agacagctcaggggaaaggcacgtggaactgaccggaaagatcctg 114
           ||||||||      ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tgaggggtaagataagacagctcaggggaaaggcacgtggaactgaccggaaagatcctg 674

                                                                       
Query: 115 ggactttcctaagtaaagctgtatgtagatgagaaaacaacccactgagaaaggctaatt 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 ggactttcctaagtaaagctgtatgtagatgagaaaacaacccactgagaaaggctaatt 614

                                                                       
Query: 175 aaaggtcaagtgctgtggactgctacggggagaggggggaaccaggcgctgctgtacact 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aaaggtcaagtgctgtggactgctacggggagaggggggaaccaggcgctgctgtacact 554

                                                                       
Query: 235 gctgggacaggcagcaatggaaacatatttttctatcacttaggaatccataaataagcc 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 gctgggacaggcagcaatggaaacatatttttctatcacttaggaatccataaataagcc 494

                                                                       
Query: 295 ctttagcccgggtatgatgccagaaaccatcccaggtgtggtaaaaaccccactggtgac 354
           |||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||
Sbjct: 493 ctttagcccgggtatgatgccagaaaccatcccaggtgtggtaaaaaccagattggtgac 434

                                                                       
Query: 355 gatcctcaagtctgctgcttaaataggagaaaaaaaggactcaataacctttcaatgaat 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gatcctcaagtctgctgcttaaataggagaaaaaaaggactcaataacctttcaatgaat 374

                                                                       
Query: 415 gcttaattaggccgtattacaggcactcaaatgtctacactacagcctcaaataccataa 474
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gcttaattaggccgtattacaggcactcaaatgtctacactacagcctcaaataccataa 314

                                                                       
Query: 475 aagaaacccccaaggggaaccagtgctctacaaagcagagaaaaggtcgcaatgatccat 534
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 aagaaatccccaaggggaaccagtgctctacaaagcagagaaaaggtcgcaatgatccat 254

                                                                
Query: 535 ttataggactcctccaacaatgctaacaattaattatacaatattaatagttt 587
           |||||||||||||||||||||  ||||||||||||||||||||||||||||||
Sbjct: 253 ttataggactcctccaacaatattaacaattaattatacaatattaatagttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 587
Length of database: 993
Length adjustment: 10
Effective length of query: 577
Effective length of database: 983
Effective search space:   567191
Effective search space used:   567191
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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