BAC Information

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BAC

Clone NameMSMg01-318J08
Chromosome8 (Build37)
Map Location 3,655,393 - 3,655,643
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664801, EG209786, D630014A15Rik, Insr, A430078G23Rik, Arhgef18, Pex11c, 1700019B03Rik, Zfp358, Mcoln1, Pnpla6, C330021F23Rik, 2310057J16Rik, Xab2, Pcp2, Stxbp2
Downstream geneRetn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-318J08.T7 (MSMg01no318_j08.b1)MSMg01-318J08.TJ (MSMg01no318_j08.g1)
ACCAG438344AG438345
length773781
length of high quality
(start - end)
337 (72 - 408)255 (74 - 328)
definitionCHROMAT_FILE: MSMg01no318_j08.b1 PHD_FILE: MSMg01no318_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:47 2005CHROMAT_FILE: MSMg01no318_j08.g1 PHD_FILE: MSMg01no318_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:00:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCTAAATAACGCG
GAATTCTTTGTTTATCTCCAACCCCATTTTTTAATGGGGTTATTTGAATT
TCTGGAATCCAGCTTCTTGAGCTCTTTGTATGTATTGGATATTAATCCCC
TATCAGATTTAGGATTGGTAAAAATTCTTTCCCAATGTGTTGGTGGCCTT
TTTGTCTTATTGACAGTATCTGTTGCCTTACAGAAGCTTTGCAATTTTAT
GAGGTCCCATTTGTTGATTCTTGATCTTACAGCACAAGCCATTGCTGTTC
TGTTTAGGATTTTTTTCCCTGTGCCCATATTTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAAATTTCAGTGTCTCTGGTTTTATGTGGAGTTCTCTGAT
CCACTTAGACTTGAGCTTTGTCACANCCCCACCACAATGGATCAATTTGC
ATTCTTCTACATGATAACTGCCAGTTGTGCCAACACCTTGTGTTGAATAT
GCTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCTAGT
GACCATACGTTGTGATTTCATTTCTGGGTCTTCAATTCTATTTCCATTGA
TCTATCTGTCTGTACAAGTACCAGTACCTTGCTATTTTTTATTACAATTG
CTCTGGAATATTAGTCTTGCAGTCCCGTTATGTTGTATTCCCCCAAGAGG
TTTTTTTTTATGTTTGATAACAAGTTTTTGCTTATTCCTAGGGATTTCTT
GTTATTCACCTATGAATTTGTTT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTCCCAATTCCATAGTGAGGGTCTGGTGGTGTGGCTTA
GCAAGGGAGCAGTTGACTAGATTTTAGCTGGTAGAGCTTGCCTACACTGT
ATATCCCCGCCAAACATAGAAACATACATGACAGCTGTGGTCACACAGGG
ACCGTGTCTCAGTTTGCATCTCCAGCCCTACAGGTGAAGTCTTGGCTCCT
AGCCTTGCCCCTCCCACCATGGTCCCTGGTGTTATCTCCAGACAACGTCC
TGAGAAGACAATCCTTCTAATGTATGTATTTTTTGAGCAGGAGGGAAATC
CCTCCTCTGGGACCTCTAGAGTTCACCTCTCTTGGGGTCAGATGTGGCAA
TGGAAGGTCAGGGGCCAGCCCCACACCCCTCTCTCAAGGCAGGATGGGCC
AGAAGTCAACAAGAATGAGCTGTGGCACAGGAGCTAATACCCAGAACTGA
TGTGTGTCCTGCTAAGTCCTCTGCCACGTCAAGTGATAGCCATCCCCCTG
TCAGAGCGCTGATGTGTCGGCCCCAGAGCTGCTGAATGTCCATCCATGTG
TGCCCTCATGAACTAACGGACTTTTGTTTCTGACTCCCCCTTCATGGAAA
AGGTCTGGTCCAATGTTGCTTATCTTGCATTGTTCTCTTGCTAGCAACCA
CTGTTATGAAACAACCTTTTCTTTCTCCTCTCCCTTTTTCCTTCTTCCTT
CCATGGCCACTTGACACGGTTGGAGTTCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no318_j08.g1 MSMg01no318_j08.g1 CHROMAT_FILE:
MSMg01no318_j08.g1 PHD_FILE: MSMg01no318_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:00:47 2005
         (255 letters)



>mm_chr8_3655193_3655847
          Length = 655

 Score =  472 bits (244), Expect = e-137
 Identities = 250/252 (99%), Gaps = 2/252 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atagtgagggtctggtggtgtggctt-agcaagggagcagttgactagattttagctggt 59
           ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 201 atagtgagggtctggtggtgtgg-ttcagcaagggagcagttgactagattttagctggt 259

                                                                       
Query: 60  agagcttgcctacactgtatatccccgccaaacatagaaacatacatgacagctgtggtc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agagcttgcctacactgtatatccccgccaaacatagaaacatacatgacagctgtggtc 319

                                                                       
Query: 120 acacagggaccgtgtctcagtttgcatctccagccctacaggtgaagtcttggctcctag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 acacagggaccgtgtctcagtttgcatctccagccctacaggtgaagtcttggctcctag 379

                                                                       
Query: 180 ccttgcccctcccaccatggtccctggtgttatctccagacaacgtcctgagaagacaat 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ccttgcccctcccaccatggtccctggtgttatctccagacaacgtcctgagaagacaat 439

                       
Query: 240 ccttctaatgta 251
           ||||||||||||
Sbjct: 440 ccttctaatgta 451


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space:   158916
Effective search space used:   158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)