BAC Information

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BAC

Clone NameMSMg01-319L05
Chromosome8 (Build37)
Map Location 60,698,829 - 60,699,059
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
Downstream gene4930431L04Rik, BC030500, LOC665116, LOC436042
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319L05.T7 (MSMg01no319_l05.b1)MSMg01-319L05.TJ (MSMg01no319_l05.g1)
ACCAG439144AG439145
length737712
length of high quality
(start - end)
233 (132 - 364)---
definitionCHROMAT_FILE: MSMg01no319_l05.b1 PHD_FILE: MSMg01no319_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:05 2005CHROMAT_FILE: MSMg01no319_l05.g1 PHD_FILE: MSMg01no319_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCAGAGGATCCGCGGAATT
CTCGCCACATCTCCAAACGTTTCTCCTTAGAACCATACAAGCCTATCAAC
TCCATACCCGGTAAAATAAGCGCCACTTGAAGAATATACATTGATAAGTA
AATATACAATAAATCCTTAGGCTTGGACCACTTTAGCATCCATCCAAAGT
CATTGCATGAAACAATGAGGAAGTAGAATACTACAAAAGGTATTCTTTTA
TAACCATAAAATCTAGTCACTGATAACTGGATACTAGGCCAGATACTTAG
AATACCCAAGACATAAAATACAATTTGTGAAACTCATGAAACTCAAGAAG
AACGAAGACCAATTTGTGTACACTCTGCCCCTTCTTACAATTGGCAACAA
AACACCCATGGAATGACCCACACACACAAAGATTGGAGCTGAGACGAAAG
GACCATCTAGACACTCCCATATCACGCGGATCCATCCCACAATCAGCTTC
CAAACGCTGACACCATTGCATACACTAGCAAGATTTTGCTGACAGGACCC
TGATATACCTGTCTCTTGTGAGACTATGCTGGGGCCTATCTAACACAGAA
GTGGATGCTCACAGTCAGCTATTGGACCGATCACTGGGCCCACTATGTAG
GACCTACAGAAAGCACCAACGAGCTCAAGGTGCCTGCTACCCTATCAGTG
GAAAAACAATATGGACTAACCTTTACCCCAGAGGTCG
ATGGAGAGAGGGGGACGGTTGAGCCGAGATAAGGGAAGCTCGGTGTCGTC
GGCGTGGGGGGCGAGGGGGGGGGTGAGGGCGGCTAACCATTTAAAAAATA
GTTTCGGAATTCTCTCCTTCTTACTTCTTTCTTATCAACCACCCTTTCCC
TAACCCTCCATTAGANACACTACTTATACTTCACTTCTATTCTTATATCC
ATTCTCTGCTCTTTTTTTACATTATTTTCCCTTTCACCTATTTCTACTTA
CTGCAACAATAACATCCATCTTTTTATGACAAACCATACCAATATACTGA
TACAACTAAGAATGCATAAGAAACACTTATGTCAAATGCAACTTTACACT
TTTAATATTCTTATACTCACTATCCTCATCTTCACCCTCATTACTAGTCA
CTCCACCCTTATTTGATACATAATAATTACCTTTAACTAACGATAAACTT
TTATTATTCCTGTTCCAACAATACTTTTATACTCTCATTTCTCTTATTTT
GACTTTATTCCATTTCTTACTCTATTATTATAATTCCCTTCCCCTCTTTA
GGCCCAAGTGTAGGGGGGTGGGGAAAACCACCNTNNTNNNNNNNNGGGCC
CTTTCATCTNNTTGTNTGTATAGAANNCNTTTGNCNCGGTCACCCGCACN
NTTGGGGCNNCGGGTGNGCTNNNNCTNNAATGGNCTTNTTGTTTANGCAN
GCTTTTTAATAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_l05.b1 MSMg01no319_l05.b1 CHROMAT_FILE:
MSMg01no319_l05.b1 PHD_FILE: MSMg01no319_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:05 2005
         (233 letters)



>mm_chr8_60698738_60699370
          Length = 633

 Score =  408 bits (211), Expect = e-118
 Identities = 226/231 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaatatacattgataagtaaatatacaataaatccttaggcttggaccactttagcatcc 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 322 gaatatacattgataagtaaatataaaataaatccttaggcttggaccactttagcatcc 263

                                                                       
Query: 61  atccaaagtcattgcatgaaacaatgaggaagtagaatactacaaaaggtattcttttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atccaaagtcattgcatgaaacaatgaggaagtagaatactacaaaaggtattcttttat 203

                                                                       
Query: 121 aaccataaaatctagtcactgataactggatactaggccagatacttagaatacccaaga 180
           ||  ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 202 aaagataaaatctagtcactgataagtggatactaggccagatacttagaatacccaaaa 143

                                                              
Query: 181 cataaaatacaatttgtgaaactcatgaaactcaagaagaacgaagaccaa 231
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 cataaaatacaatttgtgaaactcatgaaactcaagaagaacgaagaccaa 92


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)