BAC Information

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BAC

Clone NameMSMg01-319N12
Chromosome8 (Build37)
Map Location 58,089,186 - 58,089,502
singlet/doubletsinglet
Overlap genenone
Upstream geneGm392, LOC100040212, Gm1153, EG664808, EG664818, EG664834, EG664859, EG664876, LOC100040356
Downstream geneLOC664916, Adam29, Glra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-319N12.T7 (MSMg01no319_n12.b1)MSMg01-319N12.TJ (MSMg01no319_n12.g1)
ACCAG439248AG439249
length731719
length of high quality
(start - end)
349 (63 - 411)403 (64 - 466)
definitionCHROMAT_FILE: MSMg01no319_n12.b1 PHD_FILE: MSMg01no319_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:14 2005CHROMAT_FILE: MSMg01no319_n12.g1 PHD_FILE: MSMg01no319_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:02:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCT
CACCTGATGGATATTTAATGGCTGAGAGGCACCTGAAAAAATGTTCAGCA
TCCTTAATCATTAGAGAAATGCAAATCAAAACAACCCTGAGATTCCACCT
CACACCAGTCATATTGGCTAAGATCTAAAATTCAGGTGACAGCAGATGCT
GGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCTGGTGGGATTGC
AAGCTTGTACAACCACTCTGGAAATCAGTCTGACAGTTCCTCTGAAAACT
GGATATAGTACTACTGGAGGATCCTGGAATACCTCTCCTGGGCATATATC
CAGAAGATGTTCCAACCGGTAAGAAAGACACATGCTCCACTATGTTCATA
GCAGCCTTACCCACAACAGCCAGAAGCTGGAAAGAGCCCAGATGCCCCTC
AACAGAGGGATGGATACAGAAAATGTAGTACATTTACACAATGGTGTACT
ACTCAGCTATTANAAAGAATGAATTTATGANATTCCTAGGCAAATAGATT
GACCTGGAGGGTATCATCCTGAGTGAGGTAACCCACTCACAACGAACTCA
CACAATATGTACTCACTGATAAGTGGATATTAGCCCAGAAACTTANGATA
CCCAAGATATAAGATACNACTTGTTAAACACATGAAACTCAAGAAGAAGG
AAGACAAAGTGTGGACACTTTGCCCCTTCTT
AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTTCCAGAAATTCCAGGCTAGTCCCCTCTTTCTCCTATATCAGGTT
CAGTGTATCTGTTTTTATGTTGCAGTTTTTGAACCATCTAATCTTAAGTC
TTGTAAAAGATGGTAAATATAGATCTATTTGGATTCACTACACACCACTA
TCCTGTTTGACTAACACCGTTCAATTGAGAATGTGTCTTTTTTTTTCCCC
TGTAGGGAATATTTCAGACTTCATTATCAAAACATAGGTATCCATACATA
TGTGGATTTACATATTTCTTATCAATTTGATCTCTTTGATCAATGTATCA
ATGTATCTGGTAATATAGCTTAAAATAAAGTATTGTGATAACTCCAAAAG
TTATTTTATCACCGACCATGGATTTTTCTTTCCTGTTGTTGTTTTTGGTA
GAATGGTTGGTTGGNTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCN
NNNNNNNNNNNNNNNNNNNNCNNNNNNNNNNNNNTGNNNNNNTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCNNTNNNNCNNNTTNNNNNNNGTTNGTC
GGNTTTTTTNNNNTTTTNNGNNNTNGGGGGGTTNNCCNCCCTTTTTTTTT
TTTTTTGGGTTCNNGNGCNTGTTCTCNCNTGTCTCGTTTTTTCTTCCGTG
TTCGTTTTTGGGTCGTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no319_n12.g1 MSMg01no319_n12.g1 CHROMAT_FILE:
MSMg01no319_n12.g1 PHD_FILE: MSMg01no319_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:02:14 2005
         (403 letters)



>mm_chr8_58088700_58089502
          Length = 803

 Score =  538 bits (278), Expect = e-157
 Identities = 308/318 (96%), Gaps = 1/318 (0%)
 Strand = Plus / Minus

                                                                       
Query: 84  agtcttgtaaaagatggtaaatatagatctatttggattcactacacaccactatcctgt 143
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 agtcttgtgaaagatggtaaatatagatctatttggattcactacacaccactatcctgt 744

                                                                       
Query: 144 ttgactaacaccgttcaattgagaatgtgtctttttttttcccctgtagggaatatttca 203
           ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 743 ttgactaacaccgttcaattgagaatgtgtc-ttttttttcccccgtagggaatatttca 685

                                                                       
Query: 204 gacttcattatcaaaacataggtatccatacatatgtggatttacatatttcttatcaat 263
           |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||
Sbjct: 684 gacttcattatcaaaacataggtatccatacatatgtggatttacatatgacttatcaat 625

                                                                       
Query: 264 ttgatctctttgatcaatgtatcaatgtatctggtaatatagcttaaaataaagtattgt 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttgatctctttgatcaatgtatcaatgtatctggtaatatagcttaaaataaagtattgt 565

                                                                       
Query: 324 gataactccaaaagttattttatcaccgaccatggatttttctttcctgttgttgttttt 383
           ||||||||||||||||||||||| |  ||  |||||||||||||||||||||||||||||
Sbjct: 564 gataactccaaaagttattttattattgaggatggatttttctttcctgttgttgttttt 505

                             
Query: 384 ggtagaatggttggttgg 401
           ||||||||||||||||||
Sbjct: 504 ggtagaatggttggttgg 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 403
Length of database: 803
Length adjustment: 9
Effective length of query: 394
Effective length of database: 794
Effective search space:   312836
Effective search space used:   312836
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)