BAC Information

Click to search

BAC

Clone NameMSMg01-320N17
Chromosome8 (Build37)
Map Location 64,907,779 - 64,908,136
singlet/doubletsinglet
Overlap genenone
Upstream geneCbr4, Palld, LOC100040872, BC013672, Anxa10, LOC100040775
Downstream geneLOC384830, LOC100040804, LOC665267, Spock3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-320N17.T7 (MSMg01no320_n17.b1)MSMg01-320N17.TJ (MSMg01no320_n17.g1)
ACCAG439985AG439986
length740817
length of high quality
(start - end)		359 (380 - 738)---
definitionCHROMAT_FILE: MSMg01no320_n17.b1 PHD_FILE: MSMg01no320_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:28 2005CHROMAT_FILE: MSMg01no320_n17.g1 PHD_FILE: MSMg01no320_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:03:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGAAAGTACCATTACAGAACAATATATCAAGATAAGTGTTGAGTT
GGGAACCTCTATTCACTATACCTAAAATTTATCCAAATATATACATGTAA
ATTCTTTCCTTTTATTGAAAATAGCTTTTTGCTTCTTCTATAATGTATCC
TGGTCATATTTCCTCCTCCATTTACTCCTCCCAGCTTCTCCATACAATCC
ACTCCTTCCATCCATAGCCCCTTTCTTCCTTAGAGAACAACGAAGCTTCA
ATAATGGGAAAAAAAAAAGAAACAAGATATAACAAAATCTAATAATCGGA
CTAGAACAAAATATAGAGGAGAAAAAGAGCCTAAGAAAAGGCACATGCAA
CAGATAGACACAGCTGCACTTGCTTTCACATTCAGGAGAAAACACACAGG
CAAAACATGAAACAGGAAGCTATGGATCCGTGGGCCAAAAAAGGTGGGGG
GACTATTGAATAAAATAAAAGTAAAAAGGAAGATAACATTAAAACTTCCA
ATGAATCCTAACACCACCTCAGCCACAAAATCTTTGACTTATAGCTTGTT
CTGCCTGCAGAATTTTCTCGGACCTGAGCCTAGCAGAATAATAGACTTCA
AAGAGACCAAAGGTGAGTTTGCTCAGCAACCGATGGGAGTAGATACAGAG
TCCTACAGGCAACCATTAGGTAGAGGTCAGTGAGTCTTGN

AACGGTAAGTTGGATATATAGAATAAAAAAATTATACAACGGAGAAAGGA
GGAGGGAGAGGAGGTAGCCACACGCCGGGGATCATGAAGACAGAGAGAAA
AAATCAAGAAAAATGAAGTGGGGAAGGGGGAGGAATAGCCCATAAAAAGG
GGAGAGGGAGAGAAAAGGAGAGAGGGAGGGAAGAGGAAAAAAAGGAGAAT
GAGAGGAAGAGAGGGGGAAGGGAGAGTGAAAAGAAAAAAAGAGAGAGAGA
AAGAGAGAAGGGGGGGGGGAAAATAAGGGGGGAAAGTGTGAGGAAGAAGG
AGAAGGGTGAGAGTAAGGGAGAGGTTGTTTTTGTTGAGGGGGGGGGTGGC
GAGAAAGGGGAAAAGAATTTGAGTAGTTTCCAAGGACAAGACCCACAAAT
AAGTATGTGGAGGAAGGGTAGGGGGGGGGCGCCTATAAAACCTTATTTTA
AAAACGGGGGGTTTAGTTCAGGGGGGAGACAACAATAAAAATAAAGGCGG
GGGGGGGATGGTGATAAAGGGGGGCAGTTAGTAAATGAGGGGAGAGGGAG
AGAGAGGGAGGGGATAAGTAGACAGGGAGGAAGGGAGAGATAGAGGGTGG
TGGTAAGGGAGAGAGAAAAAAAATAATATTAAGAGGGGGACGAGGACGGG
GGGGGGGTGAGGTGTGGAGGGAGGGGAGATAAAAAGAAAAAAGGGGGGGA
GAGAGGAGGATATGAGGAGCGTGGGGGGGGGAGAGAGAGGAAAAAAAGAG
GTAAAAGGGGGGAGGGGAGAGGGAAGAAGGAATAGGGGTAAGTGGAGATG
GTATATGGACTATTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no320_n17.b1 MSMg01no320_n17.b1 CHROMAT_FILE:
MSMg01no320_n17.b1 PHD_FILE: MSMg01no320_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:03:28 2005
         (359 letters)



>mm_chr8_64907579_64908336
          Length = 758

 Score =  596 bits (308), Expect = e-175
 Identities = 347/360 (96%), Gaps = 3/360 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctaagaaaaggcacatgcaacagatagacacagctgcacttgctttcacattcaggaga 60
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cctaagaaaaggcacatgccacagatagacacagctgcacttgctttcacattcaggaga 260

                                                                       
Query: 61  aaacacacaggcaaaacatgaaacaggaagctatggatccgtgggccaaaaaaggtgggg 120
           ||||||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 261 aaacacacacgcaaaacatgaaacaggaagctatggatccatgggccaaaaaagg-gggg 319

                                                                       
Query: 121 ggactattgaataaaataaaagtaaaaaggaagataacattaaaacttccaatgaatcct 180
           ||||||| ||| ||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 320 ggactatagaaaaaaataaaattaaaaaggaagataacattaaaactttcaatgaatcct 379

                                                                       
Query: 181 aacacca-cctcagccacaaaatctttgacttatagcttgttctgcctgcagaattttct 239
           ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aacaccatcc-cagccacaaaatctttgacttatagcttgttctgcctgcagaattttct 438

                                                                       
Query: 240 cggacctgagcctagcagaataatagacttcaaagagaccaaaggtgagtttgctcagca 299
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gggacctgagcctagcagaataatagacttcaaagagaccaaaggtgagtttgctcagca 498

                                                                       
Query: 300 accgatgggagtagatacagagtcctacaggcaaccattaggtagaggtcagtgagtctt 359
           |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 499 accgatgggagtagatacagagtcctacaggcaaacattaggtagaagtcagtgagtctt 558


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 758
Length adjustment: 9
Effective length of query: 350
Effective length of database: 749
Effective search space:   262150
Effective search space used:   262150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |