BAC Information

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BAC

Clone NameMSMg01-321G22
Chromosome8 (Build37)
Map Location 128,350,849 - 128,351,194
singlet/doubletsinglet
Overlap geneE330039K12Rik
Upstream geneTrim67, 2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax, Disc1, Sipa1l2, 4933403G14Rik, 2310079N02Rik
Downstream geneBC021891, Kcnk1, Slc35f3, LOC668434, 1810063B05Rik, EG619653, Irf2bp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321G22.T7 (MSMg01no321_g22.b1)MSMg01-321G22.TJ (MSMg01no321_g22.g1)
ACCAG440403AG440404
length761757
length of high quality
(start - end)
196 (122 - 317)345 (69 - 413)
definitionCHROMAT_FILE: MSMg01no321_g22.b1 PHD_FILE: MSMg01no321_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:10 2005CHROMAT_FILE: MSMg01no321_g22.g1 PHD_FILE: MSMg01no321_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGGACTGGGCGGAANNCCAG
AAGATTTTGCCAGGACGAGGGCGGAGNNCAAGGNCATCTGGGACAAACAA
GNCCCAAANCCAGGCATGCCGGCACACACCTTTAANCGGGGCCACACCTT
CTGCTGGAGACCTATGTAAGGACATTGGAAGAATGAAGATTCACTCTCTT
CTTCCAGTGCTTGCCTTGTGGGACTGAGCAACTGCTAGATCCTTGGACTT
TTATTCACAACTGCTGCTGACCATTGTTGGGGTAGGACTGTAAGTCATCA
ACAAATTCCCTTACTCTTTATATTTTACACANAAGNNCNGNGACTCCAGA
GAACCCTGTTTTTTTCTCCCCCCCCCCCCCCGCTAGCCCTGTAAGCCTAA
GGCCAGGCTAGGTGCCACCCCACATAAAAAAATAACAGCTCTGGGGAGGT
GGAGATAGGTAGAGACAAGAGGATCCCTGGTACTTGCTGGCCAGCCATAC
TAGCCTAATCGGCGGATTCTAGGTCAAGGAGAGACCTCACCTCAAAGGAG
GCAGAGAGCATTCCCAAACTGATACTGTACATTGTCCTCTCAATGCGTGT
GCGCGCACACTCACATTCACACACACATTCCCCTCTTCCCCTGTCATATT
CCCCGCTCCTGTGTTTTTTTTTGTCCGTGACCCAACCCACACACCAGTTA
AATTAGGGGTTTGTTGTTGCCCATGGGTCTCTTGTATCGCAAGGTGCTTT
GATCTATTACT
CTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCAGGCCAGCGAGAGACTGTCTCAGAAAACAGA
GATGATGAATGGCCCTTGAGGAATGACATCCAAGATTATCCCCTGACTTT
CTCATGCATACACGTGTGTGCACACCTCTACATACATAAAATGCACAGGC
CAAAAAAAAAAAAAGTGGGAGGGAGGGCCTGATGGCAGATGCCTACATCA
CTCACTCAAGAGTTGACGTTTGACCTCTCCGTCCTCTGCAGCCTTTTCTC
AGCATCGTGCTCTTTGCCCTGGCGGGCACCGTGGGGCTCATCACCCACCA
TCTGCTCCCTCAGCTCCGGAAGCACCACCCCTGGATGTGGATCTCACACC
CTGTGCTCAGGACCCCCCACTACCAGCAGCGGGAGGCAAGAGGTCAGTGT
CGTAGTCTCAGGGGGGACAGCAAAGCAGTGGGCACGCCTCTCATGGCACA
GGGGCACAGCTCTGTGAGTGTGATCAGTGCCACGGTGCCTCACGCTTCAA
AGGAAGCAGGGTTCACTGTGTGTTTGCCCATGTTACAAAGATGGAGTCTA
GGCGATGCACAAAACAGGCTGCTCAGGTGGAATAGGAAAGAAAGTCCGTC
AAATTAACTATGAAGTTCTGTCAGAACAATCACTGCTTACTGATTCCATA
GTGAAAATTGCATCCATTGCCCATGCTTGAAAGTTACAATTCTTGGTTAT
AGCGCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_g22.g1 MSMg01no321_g22.g1 CHROMAT_FILE:
MSMg01no321_g22.g1 PHD_FILE: MSMg01no321_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:10 2005
         (345 letters)



>mm_chr8_128350554_128351300
          Length = 747

 Score =  619 bits (320), Expect = 0.0
 Identities = 339/346 (97%), Gaps = 2/346 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggccagcgagagactgtctcagaaaacagagatgatgaatggcccttgaggaatgaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 caggccagcgagagactgtctcagaaaacagagatgatgaatggcccttgaggaatgaca 582

                                                                       
Query: 61  tccaagattatcccctgactttctcatgcatacacgtgtgtgcacacctctacatacata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tccaagattatcccctgactttctcatgcatacacgtgtgtgcacacctctacatacata 522

                                                                       
Query: 121 aaatgcacaggcc--aaaaaaaaaaaaagtgggagggagggcctgatggcagatgcctac 178
           |||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 521 aaatgcacaggccaaaaaaaaaaaaaaagtgggagggaaggcctgatggcagatgcctac 462

                                                                       
Query: 179 atcactcactcaagagttgacgtttgacctctccgtcctctgcagccttttctcagcatc 238
           ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 461 atcactcactcaagagttgacttttgacctctctgtcctctgcagccttttctcagcatc 402

                                                                       
Query: 239 gtgctctttgccctggcgggcaccgtggggctcatcacccaccatctgctccctcagctc 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 401 gtgctctttgccctggcgggcaccgtggggctcatcacccaccatctgctccctcagcta 342

                                                         
Query: 299 cggaagcaccacccctggatgtggatctcacaccctgtgctcagga 344
           |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 341 cggaagcaccacccctggatgtggatctcacatcctgtgctcagga 296


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 747
Length adjustment: 9
Effective length of query: 336
Effective length of database: 738
Effective search space:   247968
Effective search space used:   247968
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)