BAC Information

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BAC

Clone NameMSMg01-321M07
Chromosome8 (Build37)
Map Location 91,759,214 - 91,937,908
singlet/doubletdoublet
Overlap genenone
Upstream genePapd5, Adcy7, Brd7, LOC100040369, Nkd1, 9130017C17Rik, Nod2, Cyld, LOC675985, Sall1, LOC100041089, EG625801, EG384862
Downstream geneTox3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-321M07.T7 (MSMg01no321_m07.b1)MSMg01-321M07.TJ (MSMg01no321_m07.g1)
ACCAG440650AG440651
length809741
length of high quality
(start - end)
132 (70 - 201)483 (74 - 556)
definitionCHROMAT_FILE: MSMg01no321_m07.b1 PHD_FILE: MSMg01no321_m07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:35 2005CHROMAT_FILE: MSMg01no321_m07.g1 PHD_FILE: MSMg01no321_m07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,759,214 - 91,759,344)(91,937,491 - 91,937,908)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTCCAGTTACATGAAGACAGAATAAACAGATCTGTCACTCACCTCTA
GATTAGAGTTTCTTTTGAGCCTCAAAAGGAAAACAAAAGAAAAGATACTA
GATGCACTGATTGTTCATAGATGGGGCAGGGAGTGGGGGGTGGTGGGAGG
NNNNNNNTTTTTTTTTTTTTTATTTTTTCCTANAAAACAGAAACCCGTTT
TTTTTTTTTTTTATTTTAATATCTTTTCCTTCTTTAGCCACATATCTCTC
CCCCGCGCGCCCCATTTTTTTTTTCCCCTATTTTCATACCTTCCCTCCAA
CTACCGTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCGTAGAAAGATAAAT
TTTTATCATTTGTGAGTGACACCCCCCCCCCCAAAAAAAAAAAATATTAC
CGGGGGGGTGGGGGTCTTCACTCCCACTTCATCTCCTTTCCCGAATACTC
CCGCCCTTCCTTTTATTCCTTTTTTTCCACCACCCACTCACTTCCCCCTT
TTTTCCCCTTTTCTCTTTCTCCTATCTCGCCTTTTTTTTCTCCTCCCTTT
TTTTTTTTCTTTCCCTTTCCCTCCCTTTTCTTTTTCCCCTTTTTTTACCG
TCTTACACCTCTCACTATAAGCTTTTTTCCCCCCCTTTTTTTTTCCCTTT
TTTTTTCCCCCTTTTTTTTTTCCTTTTATTTCCCCCTCCCCCCTCTCCCC
TCCCTATTTTTCCCTATCCCTTCCTTTTTTTTTTTATTTTTTCCATCTTT
TCCGTTTTG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTAACATTAGCACCAGTAACTTCCTA
GTATGACCCGGATTCAACCTTCCTGCTCTCTGGCCCTGTATGTTCAGTAT
TTTTTTTAAGACTTATATTTTTATTTCAGGTATGGGAATACACTGTCTCT
GTCTTCAGACACACCAGAAGAGGGCATCAGATTCCCATTATAGATGTTTT
TGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAAC
AGTCAGTGCTCTTAACCACTGAGCCACCTCTCCAGCCCATGTTCAGCGTT
TCTACAACCACCTAGGCCCACACTCAAATGTAATGAGAGAAAACTGTCCA
GATGTTGGGCTCCGCCATCTGCTCCTCTGCCTTGCATGAAGTCATCTTGG
TTCTCTACAAAATGCTCCCTTCCCAGGGGCTCTTGGTAGGCAAAATGACG
GAATGGGTCACATGATCTGAAAATCCCAACTTGATGGAAAAGGCTCAAGA
CTTCCTGTGGAGTCTTCTATGCATGAATGTGGAAGGTACATTTTGCCTCC
ACTTGCCAGGATTCCCCCTTACCTCTGGCCACTTGTGTTAATCCCAAGAT
TCATCATGATAAATCAACTCCACCATTTTTGTTTCGAAATTTATGCATGC
ACTATTAATTATTACATACTTGACTCTGAGTTAGAATTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no321_m07.b1 MSMg01no321_m07.b1 CHROMAT_FILE:
MSMg01no321_m07.b1 PHD_FILE: MSMg01no321_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:35 2005
         (132 letters)



>mm_chr8_91759014_91759545
          Length = 532

 Score =  246 bits (127), Expect = 5e-70
 Identities = 130/131 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagaataaacagatctgtcactcacctctagattagagtttcttttgagcctcaaaagg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 acagaataaacagatctgtcactcacctctagattagagtttcttttgagtctcaaaagg 260

                                                                       
Query: 61  aaaacaaaagaaaagatactagatgcactgattgttcatagatggggcagggagtggggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaacaaaagaaaagatactagatgcactgattgttcatagatggggcagggagtggggg 320

                      
Query: 121 gtggtgggagg 131
           |||||||||||
Sbjct: 321 gtggtgggagg 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 132
Length of database: 532
Length adjustment: 8
Effective length of query: 124
Effective length of database: 524
Effective search space:    64976
Effective search space used:    64976
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no321_m07.g1 MSMg01no321_m07.g1 CHROMAT_FILE:
MSMg01no321_m07.g1 PHD_FILE: MSMg01no321_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:35 2005
         (483 letters)



>mm_chr8_91937026_91937908
          Length = 883

 Score =  801 bits (414), Expect = 0.0
 Identities = 417/418 (99%)
 Strand = Plus / Minus

                                                                       
Query: 66  tatgttcagtattttttttaagacttatatttttatttcaggtatgggaatacactgtct 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 883 tatgttcagtattttttttaagacttatatttttatttcaggtatgggaatacactgtct 824

                                                                       
Query: 126 ctgtcttcagacacaccagaagagggcatcagattcccattatagatgtttttgagccac 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 823 ctgtcttcagacacaccagaagagggcatcagattcccattatagatgtttttgagccac 764

                                                                       
Query: 186 catgtggttgctgggaattgaactcaggacctctggaagaacagtcagtgctcttaacca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 763 catgtggttgctgggaattgaactcaggacctctggaagaacagtcagtgctcttaacca 704

                                                                       
Query: 246 ctgagccacctctccagcccatgttcagcgtttctacaaccacctaggcccacactcaaa 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703 ctgagccacctctccagcccatgttcagcgtttctacaaccacctaggcccacactcaaa 644

                                                                       
Query: 306 tgtaatgagagaaaactgtccagatgttgggctccgccatctgctcctctgccttgcatg 365
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 643 tgtaatgagagaaaactgtccagatgttgggctccggcatctgctcctctgccttgcatg 584

                                                                       
Query: 366 aagtcatcttggttctctacaaaatgctcccttcccaggggctcttggtaggcaaaatga 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583 aagtcatcttggttctctacaaaatgctcccttcccaggggctcttggtaggcaaaatga 524

                                                                     
Query: 426 cggaatgggtcacatgatctgaaaatcccaacttgatggaaaaggctcaagacttcct 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 523 cggaatgggtcacatgatctgaaaatcccaacttgatggaaaaggctcaagacttcct 466


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)