BAC Information

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BAC

Clone NameMSMg01-322B12
Chromosome8 (Build37)
Map Location 83,978,551 - 83,978,836
singlet/doubletsinglet
Overlap genenone
Upstream geneGypa, Frem3, Smarca5, Gab1, LOC666237, LOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852
Downstream geneInpp4b, LOC671182, Il15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-322B12.T7 (MSMg01no322_b12.b1)MSMg01-322B12.TJ (MSMg01no322_b12.g1)
ACCAG440885
length749829
length of high quality
(start - end)
---288 (126 - 413)
definitionCHROMAT_FILE: MSMg01no322_b12.b1 PHD_FILE: MSMg01no322_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:59 2005CHROMAT_FILE: MSMg01no322_b12.g1 PHD_FILE: MSMg01no322_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:04:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
GAAGTGTTGTATCTTNCTCNACCTTCCTTTCCTCTTTTTTTTTNNNNTAC
TATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTTCTGAAAAAGTCTAAGTGCTTCATGTCTCTTAGCAGTA
AGCTTTTAAGCAAGAAGTAACCCAGATATTTTTTTTATGGATAAAAGGGT
TTTTTGAGGAAATAAGGTAAAATAAAATCAAAATTAATAGAAGAATGAGC
AAAGCATGAAGCAAGAAAGACATTAAGAACAATATGTTTAAGGAAGAGCA
CTTTATAACACAGTTACCAACACAGGTAGCCAACAATCAGTTTTTATTAT
TGGTAACAACATGCTCATTTGTTTTATCTTGGATCTGGTGTGAGAATTTA
AGACATTTCTATTATTCTTGACCGCACCTGCCACCGAAGCCACAGTTATC
AATTAGGAAATATATATCCCCACAGATATAAACACAGTTTGCTCAGCCTA
TTTAGTGCTATTTGCTTATCTATGATTGCAGAGTTGACCACTTAGAATTG
GATAAGCAGTTAAGAGCTTCATCCCCGGGATGGTTATTTCTCCCATGCTC
CGCATTTCTTGTTTGCCTTCTACATCTTTGGCTGGGCGTGGTGAACCCAT
GAAGTTTCCCCCTTTCTGGGTTAGCACATCCTACTGGTGCTTGTACCCTG
TTCTGGCTCTTGTTTTTTTTAGTTCATAAATGTTGGAGGCTCTCTTTCGC
GAAAGCCTTCCCTCGTTATCTTCCTAAGGGTAATCACTACCTGCTAGAAT
ACCCCTTTTTTCTCCCTGGGCTTTTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no322_b12.g1 MSMg01no322_b12.g1 CHROMAT_FILE:
MSMg01no322_b12.g1 PHD_FILE: MSMg01no322_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:04:59 2005
         (288 letters)



>mm_chr8_83978351_83979038
          Length = 688

 Score =  491 bits (254), Expect = e-143
 Identities = 278/286 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagtgcttcatgtctcttagcagtaagcttttaagcaagaagtaacccagatattttttt 60
           |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 201 aagtgcttcatgtctcttagcagtaagcttttaagcaagaagtaaaatagatattttttt 260

                                                                       
Query: 61  tatggataaaagggttttttgaggaaataaggtaaaataaaatcaaaattaatagaagaa 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatggataaaagtgttttttgaggaaataaggtaaaataaaatcaaaattaatagaagaa 320

                                                                       
Query: 121 tgagcaaagcatgaagcaagaaagacattaagaacaatatgtttaaggaagagcacttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagcaaagcatgaagcaagaaagacattaagaacaatatgtttaaggaagagcacttta 380

                                                                       
Query: 181 taacacagttaccaacacaggtagccaacaatcagtttttattattggtaacaacatgct 240
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacacagttaccaacataggtagccaacaatcagtttttattattggtaacaacatgct 440

                                                         
Query: 241 catttgttttatcttggatctggtgtgagaatttaagacatttcta 286
           || ||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagttgtaatatcttggatctggtgtgagaatttaagacatttcta 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)