Query= MSMg01no322_d23.b1 MSMg01no322_d23.b1 CHROMAT_FILE:
MSMg01no322_d23.b1 PHD_FILE: MSMg01no322_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:10 2005
(685 letters)
>mm_chr8_48784271_48785355
Length = 1085
Score = 1006 bits (520), Expect = 0.0
Identities = 663/782 (84%), Gaps = 111/782 (14%)
Strand = Plus / Plus
Query: 4 ggaattcttataatgtctctgtttgcttaggtaatggtttccaagaggactcctagatca 63
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 ggaattcttataatgactgtgtttgcttaggtaatggtttccaagaggactcctagatca 174
Query: 64 ggtaagaggtttttggtatttggggattgacttgctaaaa-ggccttttgtgtgacaatc 122
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 175 ggtaagaggtttttggtatttggggattgacttgctaaaaaggccttttgtgtgacaatc 234
Query: 123 aataaaagcgcagggtagttcaggttcagtccttcagaccattcctcccctgctactaag 182
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 235 aataaaagcgcagggtagttcaggttcagtccttcagaccgttcctcccctgctactaag 294
Query: 183 agacctcaatacatcctatagtgtctgtctctctctttgatcagaccctgtacctaagaa 242
||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 295 agacctcaatacatcctgtagtgtctgtctctct--ttgatcagaccctgtacctaagaa 352
Query: 243 cactgatacccaaggtcccccagatgatgcagactattgccatggccgttgcttgcacgc 302
|||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 353 cactgatacccaag---------atgatgcagactattgccgtggccgttgcttgcacgc 403
Query: 303 tggaactgaatgataagaacctattggtgaagatgtcacctgc----------------- 345
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 404 tggaactgaatggtaagaacctattggtgaagatgtcacctgcttcggtgacaggatatg 463
Query: 345 ------------------------------------------------------------ 345
Sbjct: 464 gagaaatgagactggaactgggctaaaagtttcctccctgctggctgatctacctgttgc 523
Query: 346 ----------------------cagagtgaagggcagttactgctaacagtcctactcag 383
||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tggaagacatctcgcagttagccagagtgaagggcagttactgctaacagtcctactcag 583
Query: 384 ctatgaacgttgtgtgctatatcaacgatacagggacccatgggtaatcgtgatgtgact 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ctatgaacgttgtgtgctatatcaacgatacagggacccatgggtaatcgtgatgtgact 643
Query: 444 attacaggtgcaaccaataattttccatttgtatttaaagtccactccatagaagaaaac 503
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 attacaggtgcaactaataattttccatttgtatttaaagtccactccatagaagaaaac 703
Query: 504 actcatctaatgctgcaagccagggtgggtcgtaggctattgctttgttaaactgatgct 563
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 actcatctagtgctgcaagccagggtgggtcgtaggctattgctttgttaaactgatgct 763
Query: 564 ttaatcctgttagtttaaaaaatacgttggaatatatatattgagttcatatgttcacat 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ttaatcctgttagtttaaaaaatacgttggaatatatatattgagttcatatgttcacat 823
Query: 624 gtgtgtggaggccagaaattgagatcagccatctctattgctcaccaccttatttttgaa 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 824 gtgtgtggaggccagaaattgagatcagccatctctattgctcaccaccttatttttgaa 883
Query: 684 ac 685
||
Sbjct: 884 ac 885
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 685
Length of database: 1085
Length adjustment: 10
Effective length of query: 675
Effective length of database: 1075
Effective search space: 725625
Effective search space used: 725625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no322_d23.g1 MSMg01no322_d23.g1 CHROMAT_FILE:
MSMg01no322_d23.g1 PHD_FILE: MSMg01no322_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:05:10 2005
(248 letters)
>mm_chr8_48949174_48949821
Length = 648
Score = 470 bits (243), Expect = e-137
Identities = 246/247 (99%)
Strand = Plus / Minus
Query: 1 cagacacttgaagttggggtcagacattcttgcctacatcagtagctccataggagtcag 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 cagacacttgaagttggagtcagacattcttgcctacatcagtagctccataggagtcag 388
Query: 61 ttccacgcgaatggaaggcagagtagccataagtatccctgctaaccgactgtccacctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttccacgcgaatggaaggcagagtagccataagtatccctgctaaccgactgtccacctg 328
Query: 121 ctcctggttcctaggcctggtgaaatggaagatgttccctacagtgaagaggatgtcacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 ctcctggttcctaggcctggtgaaatggaagatgttccctacagtgaagaggatgtcacc 268
Query: 181 attgtggagactgcccaggtgcagataggactcaggtaacgcaggagggggaggggaggg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 attgtggagactgcccaggtgcagataggactcaggtaacgcaggagggggaggggaggg 208
Query: 241 aggggag 247
|||||||
Sbjct: 207 aggggag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space: 152721
Effective search space used: 152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
