BAC Information

Click to search

BAC

Clone NameMSMg01-323F16
Chromosome8 (Build37)
Map Location 97,431,129 - 97,431,745
singlet/doubletsinglet
Overlap geneCcdc102a
Upstream geneGnao1, Amfr, Nudt21, Ogfod1, Bbs2, Mt4, Mt3, Mt2, Mt1, Nup93, LOC100041555, Slc12a3, Herpud1, EG434339, AI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22, Cx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942
Downstream geneGpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6, Cnot1, LOC100041953, LOC100041088, BC031853, LOC100041972, Got2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323F16.T7 (MSMg01no323_f16.b1)MSMg01-323F16.TJ (MSMg01no323_f16.g1)
ACCAG441799AG441800
length1,3051,579
length of high quality
(start - end)		615 (90 - 704)---
definitionCHROMAT_FILE: MSMg01no323_f16.b1 PHD_FILE: MSMg01no323_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:48 2005CHROMAT_FILE: MSMg01no323_f16.g1 PHD_FILE: MSMg01no323_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:06:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCGGTTGNGNNNNGCATTGGGCGCTAAXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTCTGTAGCCAGGATCATTTTAGACTTGTGATCCTCC
TGCCTCTACCTCCCGAGCACTGGGACTACAGGCGTGAGACATCACACTAT
GTTATAGGATGCTGGGGATGGGACCCGGGGCTCTGTGCATGATTGGCAGG
TACCCTACCAAACTTTATCTTCAGCCTAGATTCCACAGTTTTTTTGGACT
TTTGGGGGGTATTCACACATACATCATGAGGTCTCTTGGGGACAGGCCCT
GGGTCTAAACATAGAATCCACTAGTTGAATGCATATGTCACCAGGGCTTG
AGGGCAATTTTCTTCAGCATCTTTTCTGCCCTCACATTTTGATTGGTACC
GACCACATGTAGGTGTGAAATTTTCTGCTCTTTTAAGGCATTGAGTGGAT
GCTCAAAGTCGGGGGGGGGGTTGAAAGCATTTTGGATGTTTGGTTTGGGG
GGGATCAGAGGCTCAGCCTATACTGTGTGGTCATTCACATGCAGGCCATA
CAGTAGTGTGCTGACTAGCCCACCTTGTTCTTCTCGAAAAGAGCAGCCTG
GCTGGCCCTCAGGTCACAGTCCAGGGCACTGGCATTCTGCCGCCGTCTGC
GGGCCAGAGCCTCCTCCAGGTCTCCAACCTGTGCGCGCAGCTTCTTGTTC
TCCCGTTCCAGGCCCAGCTTCTCTGTCTCCAGCCGCTCTCTGCGGNCCCA
CTCGGNCGCATTCTCTGCCTGGAGCCCTTCCTTCTGCAGCAGCAAGGGAG
GGAGTGAGACTCCCGGGGGGTTGGGGTGCGGTTGACANTTCATTTNNNAA
CCTCGTCCCTTGCATTATTTTTCTTTTTCTCATCCCGGTNTAATTTTGTT
TTCCAATCTTTTTCCACTTCCCAATTNNTCNGTGACCTTGTCTTCTCCAA
CTATTTTCTCACCNACTTTCATNTTNATCTTNATTTCCCCCCTNTATCCC
CATCTTACTNATTNATTTACATCTTTTGCTTTTCTCTAATCTCCTCTCAC
CTTTATGGTGCATCCCTCCTCATTTATTTTCTNTCCCTCTAATATTGTTT
NTTACGTATTTTTTTTTCTATTTTTATCCNTTTTATCTCTCCCTTTTTAC
CATATACTCATCTTCTTCCTCTATTTTCCCATTTCTTACTTTTCTACCTT
GTTATTTTTTTTCTTATCATANCATTCTTTGTCTTTTCCAATTCTCTTCT
CATTACTCTTCATNTTTTCTCTTCTCTTCNTACTCCTCTTTTACTCTCAC
TTGCT

NCCCGGGGGGGGGGGTTTTTNNNNNGGAGAAAGGGAAGAGCCGGANTGGN
CCCCAGAGAAANNCAAAAAAAAAAAAGGGTGGAAAAAGCAGAGAAGAGGG
AANNNGGGGGNNCCCACAATCCACGAACTCCGGCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCTCTTAAAAAAGGAGCGGNACCCCNGCNGN
NGNNNGNNGGGGGGGGGGGGGNNGGGGGGGGGGGGNGGGGGGGNGNNNGG
GNGGGNGNGGGNNGGATNGGGGGGGGGGGNGGNNNGGGGGGGNGGGNNGG
GNGGGGNGGGGGGGGGGGGGGGNGGGGGGGNGGGGGGGNGGNGNNNGNNN
GNNGGNNNGNGNNGNNNGGGGGGGGGGGNAAGGAGNGGGGGAGAAGAAGA
GNNGANGGANNNAGNNGGAAGGGGGAGGAGGAGAAAGAGGGNAGAGAAGA
GAAANAGGGGGAAAGAAGGGAAAGGGAAGAGGGAGAGAGGNGGGAGGGAA
GGGGAAAGANAGNGAGAAGAAGAGAGAAAGAAGGAAGNACGAAAGAAAGG
GGGAGGGGGAGGGGGGAAAAAAAACGGGGAAAGGAGGAAGGAGAAGAAGG
AAAGAGTGGGAGGAGGAAGCAAAAGAGAGAAAGAGAAGTCGGGAAGGAAC
AGGGAGGGGAAGAAGAGAAGGAGGAGAGAGAGAAGAAGGGGGGTGGGAAG
AAGGGAGAACAGAGGAGAGGGGGGGGGAGAGGGGGAGAGGAGGGAAGAAG
GAGGAAGCAAAAGAGAAAGGGGAAAGAGGAGGAGGAGGGAGGGGAGAAAG
AGAAAAGAGAAAAGAGAGGGGAGGGAGAAGAAGAAGGGGGAAAGGGGGAG
GAGGGGGGGGAAAGGAGGGGGGGGAAAAAAAAGCGGAGGAAAGAGGAGGG
AGAGGGAAGAGGGAAGAAAGGAGAAAGGGGAAGAGGGGAGAGGGGAGAAA
AGGAGAAGGGAAAGAGAGGGGGGAGAGAGGGAGGAGGAAGGGGGAGGAAG
GGGGAGAAAAGAGGGGGGAGGAGAAGAAGGAAAAGGGAGGAGGGGGAAGG
AGAGGAGGGAGGAAGAAAGGGAGAAGAAGAGGGGAAAAAAGAGGGGAAGA
GAGGAAGGAAGGGAAGGGGGGGAGAAGAGAGAGAAGAGGAAAAAGGGAAA
GAGAGAAGAAGAAGGGAAAGGAAGAAAGGAAAAGGAGAGAGAGAAGAAGG
AGGAAGGGGGAAAAAGGGGAGAGGGAAGAAGGAAGAAAGGGAAAAAAGGG
AAGGGGAGGAAAGAGAGAGAACGGGGAAGGAGGAGGAGAGAAAGAGGAAA
AGAAGGAGAGGGAAGGAGAGAAAAAGACGGGGGAGAGAAAGAAGGGAAGA
GGGGGGAAGGAAAGGATGAGAGAGGGAGGGAGGGGGAAGAGAGGAGGAAG
AAGAGGGAAGGGGGGAAGGAGGGGAGGGGAGAGCGAGAAGGAGAGAGGAA
AGGGAAGGGGAGGAAGAAAAGGCAAGAAGGGGAGAAAGGAGAAGGGAAAG
GGGAGGGGAGAGGCACGGGAAGAGGAGAATGGAAGGAAGGAGGGAGGAAG
GGAGAAAAAGAGGGAGAAGAAGAGAAAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_f16.b1 MSMg01no323_f16.b1 CHROMAT_FILE:
MSMg01no323_f16.b1 PHD_FILE: MSMg01no323_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:06:48 2005
         (615 letters)



>mm_chr8_97430929_97431945
          Length = 1017

 Score = 1166 bits (603), Expect = 0.0
 Identities = 613/617 (99%), Gaps = 2/617 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgatcctcctgcctctacctcccgagcactgggactacaggcgtgagacatcacacta 60
           ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 201 tgtgatcctcctgcctctacctcccgagcactgggactataggtgtgagacatcacacta 260

                                                                       
Query: 61  tgttataggatgctggggatgggacccggggctctgtgcatgattggcaggtaccctacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttataggatgctggggatgggacccggggctctgtgcatgattggcaggtaccctacc 320

                                                                       
Query: 121 aaactttatcttcagcctagattccacagtttttttggacttttggggggtattcacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaactttatcttcagcctagattccacagtttttttggacttttggggggtattcacaca 380

                                                                       
Query: 181 tacatcatgaggtctcttggggacaggccctgggtctaaacatagaatccactagttgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacatcatgaggtctcttggggacaggccctgggtctaaacatagaatccactagttgaa 440

                                                                       
Query: 241 tgcatatgtcaccagggcttgagggcaattttcttcagcatcttttctgccctcacattt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcatatgtcaccagggcttgagggcaattttcttcagcatcttttctgccctcacattt 500

                                                                       
Query: 301 tgattggtaccgaccacatgtaggtgtgaaattttctgctcttttaaggcattgagtgga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgattggtaccgaccacatgtaggtgtgaaattttctgctcttttaaggcattgagtgga 560

                                                                       
Query: 361 tgctcaaagtcgggggggggg--ttgaaagcattttggatgtttggtttgggggggatca 418
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgctcaaagtcggggggggggggttgaaagcattttggatgtttggtttgggggggatca 620

                                                                       
Query: 419 gaggctcagcctatactgtgtggtcattcacatgcaggccatacagtagtgtgctgacta 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaggctcagcctatactgtgtggtcattcacatgcaggccatacagtagtgtgctgacta 680

                                                                       
Query: 479 gcccaccttgttcttctcgaaaagagcagcctggctggccctcaggtcacagtccagggc 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcccaccttgttcttctcgaaaagagcagcctggctggccctcaggtcacagtccagggc 740

                                                                       
Query: 539 actggcattctgccgccgtctgcgggccagagcctcctccaggtctccaacctgtgcgcg 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actggcattctgccgccgtctgcgggccagagcctcctccaggtctccaacctgtgcgcg 800

                            
Query: 599 cagcttcttgttctccc 615
           |||||||||||||||||
Sbjct: 801 cagcttcttgttctccc 817


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1017
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1007
Effective search space:   609235
Effective search space used:   609235
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |