BAC Information

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BAC

Clone NameMSMg01-323N12
Chromosome8 (Build37)
Map Location 39,831,181 - 39,831,860
singlet/doubletsinglet
Overlap genenone
Upstream geneSgcz
Downstream geneTusc3, LOC100038974, LOC632066, EG621335, LOC434304, Msr1, EG621431, LOC100039072
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-323N12.T7 (MSMg01no323_n12.b1)MSMg01-323N12.TJ (MSMg01no323_n12.g1)
ACCAG442152AG442153
length1,3281,271
length of high quality
(start - end)		680 (132 - 811)159 (139 - 297)
definitionCHROMAT_FILE: MSMg01no323_n12.b1 PHD_FILE: MSMg01no323_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:51 2005CHROMAT_FILE: MSMg01no323_n12.g1 PHD_FILE: MSMg01no323_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:07:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNCCAATACNNNNNNNNGCAGTGGGCGCTAAGACTCACTAAGGGAGAG
GATCCGCGGAATTCATTAATTAATTTCAGAGCATTTAAAGCCCGCCCTGA
GCCATGTGTGAGTCTGAGAGACATACTAGCTTTGTGCAAAACCAAAAAAG
GCCTTAGGCCCCTCTCCAGCACTGGCAGGGGAGATTGCTAAAATCAACCT
CCCTACAGAGAGACACTGCAAAGCCCTGACACAGTACACAAGCACACTGG
GAGAGACTGGGGGAGAGGAGAAAAAGATGGAAAGGAAAACCAGGATTTGA
GGATGCTTTGGATCCGAATATTGCTGCCAAATCTAGAACAGGAATGGAGA
CTAAGAAATAGTCTGGACGTGAAATAAATAAATATTTTAAAATCTAATGA
AAATACATAGGGAAAATTTGATTTTAGAGATCCCAGCAAAGAGTAGTTCT
AGTCAACACCAGGTAGATATTTGAAGAAGATAAATAAACAAAGACTAAAA
ATCAATATATTTTTTCTTTTTTGGTTTTTGGTTTGAGGAGTACTTAGTGT
TCAAAATAATATTTCATGGCATGTTCATCCATATATACCATAGCAGTGTT
TGCTCATATTTCCCTAGCATTACACTCTCCATACCTTCCCCCACTGATTC
CCATCCTGCTCAAAAACATCCTATTTCTGCTTTTGTGATAAATTAGACAG
ACAGACNAACAGACATATATAAATAGATGGATCAAGTGATGATACCTACA
CAGCTATAGATACATGTATTTCTCATTTGAGAGAAAACAGAGCATATTAT
CTTCCTTATTCTCTTCTCCTTTGNCTTTTCTTTCCATCCTTTAGAACTCA
TCTTTCCTTATCACAGGTCCATAGGCTGTCCCTTAGTTTCNTCACACACA
CACACACACACACACACACACACACACACACACACGTGGACACATGGACA
CCTGGCTGGCCATACACCTGCCCAAACATGCGCACCCCCATGAAAACTTA
AACTTTACTTTTGAACAAAAATGGAAAAATCTTTCCCCTATTTTCCTAAA
TTGGATAAAAGAATAAATTAAAAGGTATTTAATTTCCCCCCTTTTCCTTC
TGGGAAAAAAATAAATTTTTTTTTTCCCGGAGGAAACTTAAATTGTTAAA
AAAAAAAAAGGGTTCCTCAAAATTTCTTTCCCGGGCGAAAGAAAAAAGGC
TTTCCTTTAATAAAATTTACCTCCCCCCCCTCCCAAAAATTGTTGTTTCT
CAAAGGGGGNTNNNTTTTNTCTATATAATATTATAACAAAAAAACAACTC
CCGCGGGGGAGCGCAGATCACTCCACAA

NNCCCTTTCATTNNNNNNGGATGGAGCCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAAGCCTCAACCTCAGTC
TCTTTGAAGGTTGGAATTCGTTTATGAGCTAAGTACCGTTCCTCATGTGT
ACTTAGCCTAGACTTTTACGCACAGATTCTGAGGCAATAGACAATCCATT
AGAAGGTTCATATGGGAGGGAGGGACCTGAGTGGGAAGGGGAATAGGGAT
TGGAAGAGGGGAACATGATCAGGTATTTTGTTGGGGGGTGGTGCAGGGAT
TTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTNNNNNNNNNN
NNTNNNNTTTTTNTNTTTTTTTTTTTTTTTTTTTTTTTTNTGGNNNNNNN
NNTNTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTGGGGG
GGGGNGGNGCCGTTTTTTTTGTTGTTTGGGGTTTTTGTTTTTTTTTGTGT
TTGTTTTTGTTGTTGTTGTTTTTGTTGTTTGTGTGTTTGGTGTTTTTTTG
TTGGTTTTGTGTTTTTGTTNTTTTTGTTGGGTTTTGTTTTTTTTTTGGTT
TTTGTGTTTTTTTGTTTTTTTTTGGTTTTTTGTTTTGGTTTTTTTTTTTT
TTGTTTTGTTTGGGGTTTTTTGNGTGTTGTTTTGTTGTNTTTTTGTTTTT
TTTTTTTGGGTTGTTTTTTGTTTGGTTTTTTTTTTTGTTGTGTTGTGTTT
TTTTTTGTGTTTTTTTGTGTGTTGTTGTGTTTTGTTTTTTTTTTTTTGTT
TTNTNNTGNGTTTTGGTGTTTTTTTNTTGGNTTTGTGTTGGGTTTTTTTT
GGTGTTTGGTTTNTTGTTTTTTTTTTTTTTTTTTTTGGTGGGTTTGTNTT
GTTTGGTGTGTTTTTGTTGTTTTTTTGTTGTTTTGTTTGTTTTTTNTTGT
TGTGTTTTGTTTTGTTTGTTTTTTTTTTTTTTGTTGTTTTGGGGTTTGTT
TTTTTGGTTTGGTGTTGTTTTTGTTTTTTTTGTTGTTTTGGTGTTTTTTT
TTTTTTTTGGTTTTTTGTGTTGTTTGGGGTTTTGTTTTTGTTTTTTTTGT
TTGTTTTTTTGTTTTGTTTGTTTTTGTTTTTTGTGTTTGTTTTTTGGTTT
TTGGTGTTGNTTGTTTTTTTTGTTTGNTTTTTGTTTGTGGTGTTTGTTTG
TTTTGTTTGTTGTNNTTTTGTTGTTTTTTTTTTGTGGTTTGTTTTTTGTN
GTGTTTTGGTGTGGGTGTGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no323_n12.b1 MSMg01no323_n12.b1 CHROMAT_FILE:
MSMg01no323_n12.b1 PHD_FILE: MSMg01no323_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:07:51 2005
         (680 letters)



>mm_chr8_39830981_39832060
          Length = 1080

 Score = 1309 bits (677), Expect = 0.0
 Identities = 679/680 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtgcaaaaccaaaaaaggccttaggcccctctccagcactggcaggggagattgctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtgcaaaaccaaaaaaggccttaggcccctctccagcactggcaggggagattgctaa 260

                                                                       
Query: 61  aatcaacctccctacagagagacactgcaaagccctgacacagtacacaagcacactggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcaacctccctacagagagacactgcaaagccctgacacagtacacaagcacactggg 320

                                                                       
Query: 121 agagactgggggagaggagaaaaagatggaaaggaaaaccaggatttgaggatgctttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagactgggggagaggagaaaaagatggaaaggaaaaccaggatttgaggatgctttgg 380

                                                                       
Query: 181 atccgaatattgctgccaaatctagaacaggaatggagactaagaaatagtctggacgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atccgaatattgctgccaaatctagaacaggaatggagactaagaaatagtctggacgtg 440

                                                                       
Query: 241 aaataaataaatattttaaaatctaatgaaaatacatagggaaaatttgattttagagat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaataaataaatattttaaaatctaatgaaaatacatagggaaaatttgattttagagat 500

                                                                       
Query: 301 cccagcaaagagtagttctagtcaacaccaggtagatatttgaagaagataaataaacaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccagcaaagagtagttctagtcaacaccaggtagatatttgaagaagataaataaacaa 560

                                                                       
Query: 361 agactaaaaatcaatatattttttcttttttggtttttggtttgaggagtacttagtgtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agactaaaaatcaatatattttttcttttttggtttttggtttgaggagtacttagtgtt 620

                                                                       
Query: 421 caaaataatatttcatggcatgttcatccatatataccatagcagtgtttgctcatattt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaaataatatttcatggcatgttcatccatatataccatagcagtgtttgctcatattt 680

                                                                       
Query: 481 ccctagcattacactctccataccttcccccactgattcccatcctgctcaaaaacatcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ccctagcattacactctccataccttcccccactgattcccatcctgctcaaaaacatcc 740

                                                                       
Query: 541 tatttctgcttttgtgataaattagacagacagacnaacagacatatataaatagatgga 600
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 741 tatttctgcttttgtgataaattagacagacagacaaacagacatatataaatagatgga 800

                                                                       
Query: 601 tcaagtgatgatacctacacagctatagatacatgtatttctcatttgagagaaaacaga 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcaagtgatgatacctacacagctatagatacatgtatttctcatttgagagaaaacaga 860

                               
Query: 661 gcatattatcttccttattc 680
           ||||||||||||||||||||
Sbjct: 861 gcatattatcttccttattc 880


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 680
Length of database: 1080
Length adjustment: 10
Effective length of query: 670
Effective length of database: 1070
Effective search space:   716900
Effective search space used:   716900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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