BAC Information

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BAC

Clone NameMSMg01-325I22
Chromosome8 (Build37)
Map Location 35,327,156 - 35,496,952
singlet/doubletdoublet
Overlap geneLOC619780, LOC666718, EG234159
Upstream geneWrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66
Downstream geneLOC666746, Dusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804, Ppp1r3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325I22.T7 (MSMg01no325_i22.b1)MSMg01-325I22.TJ (MSMg01no325_i22.g1)
ACCAG443416AG443417
length729727
length of high quality
(start - end)		541 (46 - 586)638 (75 - 712)
definitionCHROMAT_FILE: MSMg01no325_i22.b1 PHD_FILE: MSMg01no325_i22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:05 2005CHROMAT_FILE: MSMg01no325_i22.g1 PHD_FILE: MSMg01no325_i22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,496,415 - 35,496,952)(35,327,156 - 35,327,793)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGGA
ATTCTCAGTGTCAGCTCCGAAGTGGTGATGCACACCTTTAATCCCAGCAC
TTGGGAGGCACTTGTCTTGAAAAAACAAACACACAAACAAAAGAATTCTC
GATGTCTTCTAGTAGCTGCTCCTACCAATGTTCTCTGGGGATTTCTCCAG
CCTTCCATGGAAGAGACAGGGTGGCAAATGCTTGCTCCATCTTTACCATA
AACAAACAAATGCACTGAAGGTGTGGAAGTAGAAAAAAAAAAAGCATGTT
GCTCCCTAGTCCAGAAAGTTCTCTTGCACTATAGCAAGACAAAGTTGAAG
GCAACGATGTCAGATGGCAGTCATTGGAGTGGGTAGGAAGCGGCAGAATG
AAGACCTAGTGAGAGTAGGTTAGACACGATGACTGTCAACTGTGGGCCCT
GAGTTCTGTGGAAGTGTCCAGATTGTCTCCCTGGAGGGAAAACATGAAGA
GAAACAATGTACCTGATGCATGTCAGGGTTTGCTGCTGTTATTGTTGTTT
TTATTTGTTTGGGTTGTTTGTTTGATTACTTGGTGTTTTGGTTATTTTCC
ACACCAAAGTGTACACTGATACTTCTCCCCGATAACATAATGGTAAGACT
CGAAATCTCCCTCCACATTTCCTTTGTAAAATTGCGGCTAAATTATTATT
GATCACGATTGTTAAAGAATTACGCACAG

NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGAGACCTATGTGGAGGTGACACC
CTCATAAGTCCTGCACTACTGGCATGGAAAGGAATGTTGATAAATCAGAC
CTCATGAGCCCACAGAATCAACCAAGCAGGGCTTATGGGGACTCACAGAG
ACGGAAGCGACAACCACAGAGCCCATTTAGGCAGCAGCCCTATGGAGCTG
TAAAACATCACACAAACATTTTTTCTGGACAAAGAGTTTGCTACATTGGA
TTCTCGCCCTGCAAGGAATCTGTAAATAACACTTTGCAAGCGTTCTTTTC
TAAAAATTATTTATTTATATGTTGTTAATTTTACATGCATTGGTGTTTTG
CTTGCGTGTATGCCTGTGTAAGGCCGCCGGGTCTCCTGGAACTGGAGTTA
TAGACGGTTGTGAGCAGCCATATGGGTACTGGGACTTGAACCCTGGTCCT
CTGGAAGAACAGCCAGTGCTCTTAACTGCCGAGCCATCTCTCCAGCCCTG
CAAGCATTCTTTTTCTCAAGAAAGGAGAAACTGTTGGTTGATGAGACTCT
GGTGTGGATGAGGTGTGGGGTTAGAATAACCTGAAATTTTCCTTAGCCAT
TTTATACCGATCATCTGAACACAGGTAGAAAAAAAAATTGCCAATAAAGA
CAGACATGTCTGCTTTCACATAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_i22.b1 MSMg01no325_i22.b1 CHROMAT_FILE:
MSMg01no325_i22.b1 PHD_FILE: MSMg01no325_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:05 2005
         (541 letters)



>mm_chr8_35496017_35496957
          Length = 941

 Score = 1009 bits (522), Expect = 0.0
 Identities = 534/538 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattctcagtgtcagctccgaagtggtgatgcacacctttaatcccagcacttgggagg 63
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 gaattctcagtgtcagctgggaagtggtgatgcacacctttaatcccagcacttgggagg 877

                                                                       
Query: 64  cacttgtcttgaaaaaacaaacacacaaacaaaagaattctcgatgtcttctagtagctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 cacttgtcttgaaaaaacaaacacacaaacaaaagaattctcgatgtcttctagtagctg 817

                                                                       
Query: 124 ctcctaccaatgttctctggggatttctccagccttccatggaagagacagggtggcaaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 ctcctaccaatgttctctggggatttctccagccttccatggaagagacagggtggcaaa 757

                                                                       
Query: 184 tgcttgctccatctttaccataaacaaacaaatgcactgaaggtgtggaagtagaaaaaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 756 tgcttgctccatctttaccataaacaaacaaatgcactgaaggtgtggaagtagaaaaaa 697

                                                                       
Query: 244 aaaaagcatgttgctccctagtccagaaagttctcttgcactatagcaagacaaagttga 303
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 696 aaaaagcatgttgctccctagtccagaaagttctcttgcactagagcaagacaaagttga 637

                                                                       
Query: 304 aggcaacgatgtcagatggcagtcattggagtgggtaggaagcggcagaatgaagaccta 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 aggcaacgatgtcagatggcagtcattggagtgggtaggaagcggcagaatgaagaccta 577

                                                                       
Query: 364 gtgagagtaggttagacacgatgactgtcaactgtgggccctgagttctgtggaagtgtc 423
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 gtgagagtaggttagacatgatgactgtcaactgtgggccctgagttctgtggaagtgtc 517

                                                                       
Query: 424 cagattgtctccctggagggaaaacatgaagagaaacaatgtacctgatgcatgtcaggg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 cagattgtctccctggagggaaaacatgaagagaaacaatgtacctgatgcatgtcaggg 457

                                                                     
Query: 484 tttgctgctgttattgttgtttttatttgtttgggttgtttgtttgattacttggtgt 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tttgctgctgttattgttgtttttatttgtttgggttgtttgtttgattacttggtgt 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no325_i22.g1 MSMg01no325_i22.g1 CHROMAT_FILE:
MSMg01no325_i22.g1 PHD_FILE: MSMg01no325_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:05 2005
         (638 letters)



>mm_chr8_35326956_35327993
          Length = 1038

 Score = 1203 bits (622), Expect = 0.0
 Identities = 634/638 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgagacctatgtggaggtgacaccctcataagtcctgcactactggcatggaaaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgagacctatgtggaggtgacaccctcataagtcctgcactactggcatggaaaggaa 260

                                                                       
Query: 61  tgttgataaatcagacctcatgagcccacagaatcaaccaagcagggcttatggggactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttgataaatcagacctcatgagcccacagaatcaaccaagcagggcttatggggactc 320

                                                                       
Query: 121 acagagacggaagcgacaaccacagagcccatttaggcagcagccctatggagctgtaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagagacggaagcgacaaccacagagcccatttaggcagcagccctatggagctgtaaa 380

                                                                       
Query: 181 acatcacacaaacattttttctggacaaagagtttgctacattggattctcgccctgcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatcacacaaacattttttctggacaaagagtttgctacattggattctcgccctgcaa 440

                                                                       
Query: 241 ggaatctgtaaataacactttgcaagcgttcttttctaaaaattatttatttatatgttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggaatctgtaaataacactttgcaagcgttcttttctaaaaattatttatttatatgttg 500

                                                                       
Query: 301 ttaattttacatgcattggtgttttgcttgcgtgtatgcctgtgtaaggccgccgggtct 360
           |||||||||||||||||||||||||||||||||||||||||||||||||  |  ||||||
Sbjct: 501 ttaattttacatgcattggtgttttgcttgcgtgtatgcctgtgtaagggtgttgggtct 560

                                                                       
Query: 361 cctggaactggagttatagacggttgtgagcagccatatgggtactgggacttgaaccct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctggaactggagttatagacggttgtgagcagccatatgggtactgggacttgaaccct 620

                                                                       
Query: 421 ggtcctctggaagaacagccagtgctcttaactgccgagccatctctccagccctgcaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtcctctggaagaacagccagtgctcttaactgccgagccatctctccagccctgcaag 680

                                                                       
Query: 481 cattctttttctcaagaaaggagaaactgttggttgatgagactctggtgtggatgaggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cattctttttctcaagaaaggagaaactgttggttgatgagactctggtgtggatgaggt 740

                                                                       
Query: 541 gtggggttagaataacctgaaattttccttagccattttataccgatcatctgaacacag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gtggggttagaataacctgaaattttccttagccattttataccgatcatctgaacacag 800

                                                 
Query: 601 gtagaaaaaaaaattgccaataaagacagacatgtctg 638
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gtagaaaaaaaaattgccaataaagacagacatgtctg 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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