BAC Information

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BAC

Clone NameMSMg01-325J22
Chromosome8 (Build37)
Map Location 34,400,910 - 34,441,797
singlet/doubletdoublet
Overlap geneWrn
Upstream geneEG546052, LOC100042715, LOC628408, EG628412
Downstream genePurg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325J22.T7 (MSMg01no325_j22.b1)MSMg01-325J22.TJ (MSMg01no325_j22.g1)
ACCAG443461AG443462
length742739
length of high quality
(start - end)		697 (46 - 742)669 (71 - 739)
definitionCHROMAT_FILE: MSMg01no325_j22.b1 PHD_FILE: MSMg01no325_j22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:09 2005CHROMAT_FILE: MSMg01no325_j22.g1 PHD_FILE: MSMg01no325_j22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,400,910 - 34,401,603)(34,441,129 - 34,441,797)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAACAGCTCAGTCCAGCTAGCAGTCAATAACCAATGGAATTCTAA
GCTTCACCGGATTATTCTTTCATTTGATGTTAACTAATCTATTAACCAGA
TTTTCACACTGTCCCTATAAACTTTTAGATATAAATGAAAACTATTCTAC
CAAATAAGTTATTCATCATTTCATTTTTTAAAAAGCCACCTTAAAATGGC
AAATGTAGGAAGGACGAAACTAAGGGTTGGGATAAAATTTGAGAACAGAC
AGTTATAAACAAATCATGGAAAGCTAATGTGCATGGGATTTGAGTATATA
TGACATAAAGGAAATTCCCTTTGTTTCTAAAATTGTAAAAAAGAAAATGG
CTTTATGCATCAGTCTAACATATGAAGAGCTACAGAGGTCAGCCTCTGTG
CCTGCCATACAGTAAAAATCCACTGTAAAATGGTCAGGAAGTAGCTATCT
AGAAGTCATTACATTTATGAATTCAGTCGGCACTCAACGAACACCCAACA
AAAAGTAATCAGCTCTAAGAGTCCAGATAAGTCTACACTGATGACAACAT
GCCTTTCACTGTGCTAAGAAAGGGGAAGGTTCGAAGCATATGCCAGGCTT
CTGAATTGTGACCAGGAAGGAGTCTATCAGTTCAGCTGTTAGACAAAACA
CTACCTCGGGCTACCTAGAATGCAACTATTCATCTAAACTTT

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTAGGTGAATTCCTTATAAAGGGTGAGGAAA
AGACTGCTAGGATGGCCAAGGTATTTTTCTCTTCTTTTCTTTTTCGGTTT
TTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAGCTCACTCT
GTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCCTATCTCCGCCTCTCA
AGTGCTGGGATTAAAGGCGACCGCCACCACTGCCCGGCTTAAGGTATTTT
TCTTGAATGACCTGATGACTGGCAGTGCAAGATGATACGAAGAGTATGTT
TTGGTTGGAAAAAATCCACCAAAGTTGCAACGTGGACATGAAAAAAACTA
TAGGTGGATTTTGATATCCACGAACGGCTCCATACTAGTTATTTTCTGTT
ACTGTGATAAAACACCGTGACCAGAGAGGTCTTTAAGGAAAGGAGTTTCT
TTTGGCTCACAGTCCCAGAGGGAACAGTCTTCAGAGGCTCTGCGGGAGAA
TGGCAGAAAGCAGCCGGCTTGGCAGTGGGGCAGGAAACTGTTAGGTCACA
TCTTGAACAGCAGTCTCGAAGCAGAGAGAGCAAACAGGAAGTAGGGTGAA
GCTGTGCACTCTCAAAGCCACCCCCAGTGTCAAACTTACTCCCGGAAGGT
TGCACCACCTAAACCTCTCCAAATGGAGTCACCAACTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_j22.b1 MSMg01no325_j22.b1 CHROMAT_FILE:
MSMg01no325_j22.b1 PHD_FILE: MSMg01no325_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:09 2005
         (697 letters)



>mm_chr8_34400707_34401803
          Length = 1097

 Score = 1334 bits (690), Expect = 0.0
 Identities = 693/694 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctaacagctcagtccagctagcagtcaataaccaatggaattctaagcttcacc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaacagctcagtccagctagcagtcaataaccaatggaattctaagcttcacc 263

                                                                       
Query: 64  ggattattctttcatttgatgttaactaatctattaaccagattttcacactgtccctat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ggattattctttcatttgatgttaactaatctattaaccagattttcacactgtccctat 323

                                                                       
Query: 124 aaacttttagatataaatgaaaactattctaccaaataagttattcatcatttcattttt 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaacttttagatataaatgaaaactattctaccaaataagttattcatcatttcattttt 383

                                                                       
Query: 184 taaaaagccaccttaaaatggcaaatgtaggaaggacgaaactaagggttgggataaaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaaaagccaccttaaaatggcaaatgtaggaaggacgaaactaagggttgggataaaat 443

                                                                       
Query: 244 ttgagaacagacagttataaacaaatcatggaaagctaatgtgcatgggatttgagtata 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttgagaacagacagttataaacaaatcatggaaagctaatgtgcatgggatttgagtata 503

                                                                       
Query: 304 tatgacataaaggaaattccctttgtttctaaaattgtaaaaaagaaaatggctttatgc 363
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 504 tatgacataaaggaaattccctttgtttctaaaattgtaaaacagaaaatggctttatgc 563

                                                                       
Query: 364 atcagtctaacatatgaagagctacagaggtcagcctctgtgcctgccatacagtaaaaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atcagtctaacatatgaagagctacagaggtcagcctctgtgcctgccatacagtaaaaa 623

                                                                       
Query: 424 tccactgtaaaatggtcaggaagtagctatctagaagtcattacatttatgaattcagtc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tccactgtaaaatggtcaggaagtagctatctagaagtcattacatttatgaattcagtc 683

                                                                       
Query: 484 ggcactcaacgaacacccaacaaaaagtaatcagctctaagagtccagataagtctacac 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ggcactcaacgaacacccaacaaaaagtaatcagctctaagagtccagataagtctacac 743

                                                                       
Query: 544 tgatgacaacatgcctttcactgtgctaagaaaggggaaggttcgaagcatatgccaggc 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tgatgacaacatgcctttcactgtgctaagaaaggggaaggttcgaagcatatgccaggc 803

                                                                       
Query: 604 ttctgaattgtgaccaggaaggagtctatcagttcagctgttagacaaaacactacctcg 663
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttctgaattgtgaccaggaaggagtctatcagttcagctgttagacaaaacactacctcg 863

                                             
Query: 664 ggctacctagaatgcaactattcatctaaacttt 697
           ||||||||||||||||||||||||||||||||||
Sbjct: 864 ggctacctagaatgcaactattcatctaaacttt 897


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 697
Length of database: 1097
Length adjustment: 10
Effective length of query: 687
Effective length of database: 1087
Effective search space:   746769
Effective search space used:   746769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no325_j22.g1 MSMg01no325_j22.g1 CHROMAT_FILE:
MSMg01no325_j22.g1 PHD_FILE: MSMg01no325_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:09 2005
         (669 letters)



>mm_chr8_34441017_34442085
          Length = 1069

 Score = 1294 bits (669), Expect = 0.0
 Identities = 669/669 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggtgaattccttataaagggtgaggaaaagactgctaggatggccaaggtatttttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 taggtgaattccttataaagggtgaggaaaagactgctaggatggccaaggtatttttct 722

                                                                       
Query: 61  cttcttttctttttcggtttttcgagacagggtttctctgtgtagccctggctgtcctgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cttcttttctttttcggtttttcgagacagggtttctctgtgtagccctggctgtcctgg 662

                                                                       
Query: 121 agctcactctgtagaccaggctggccttgaactcagaaatctgcctatctccgcctctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 agctcactctgtagaccaggctggccttgaactcagaaatctgcctatctccgcctctca 602

                                                                       
Query: 181 agtgctgggattaaaggcgaccgccaccactgcccggcttaaggtatttttcttgaatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 agtgctgggattaaaggcgaccgccaccactgcccggcttaaggtatttttcttgaatga 542

                                                                       
Query: 241 cctgatgactggcagtgcaagatgatacgaagagtatgttttggttggaaaaaatccacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cctgatgactggcagtgcaagatgatacgaagagtatgttttggttggaaaaaatccacc 482

                                                                       
Query: 301 aaagttgcaacgtggacatgaaaaaaactataggtggattttgatatccacgaacggctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaagttgcaacgtggacatgaaaaaaactataggtggattttgatatccacgaacggctc 422

                                                                       
Query: 361 catactagttattttctgttactgtgataaaacaccgtgaccagagaggtctttaaggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 catactagttattttctgttactgtgataaaacaccgtgaccagagaggtctttaaggaa 362

                                                                       
Query: 421 aggagtttcttttggctcacagtcccagagggaacagtcttcagaggctctgcgggagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aggagtttcttttggctcacagtcccagagggaacagtcttcagaggctctgcgggagaa 302

                                                                       
Query: 481 tggcagaaagcagccggcttggcagtggggcaggaaactgttaggtcacatcttgaacag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tggcagaaagcagccggcttggcagtggggcaggaaactgttaggtcacatcttgaacag 242

                                                                       
Query: 541 cagtctcgaagcagagagagcaaacaggaagtagggtgaagctgtgcactctcaaagcca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cagtctcgaagcagagagagcaaacaggaagtagggtgaagctgtgcactctcaaagcca 182

                                                                       
Query: 601 cccccagtgtcaaacttactcccggaaggttgcaccacctaaacctctccaaatggagtc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cccccagtgtcaaacttactcccggaaggttgcaccacctaaacctctccaaatggagtc 122

                    
Query: 661 accaactga 669
           |||||||||
Sbjct: 121 accaactga 113


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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