BAC Information

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BAC

Clone NameMSMg01-325O08
Chromosome8 (Build37)
Map Location 127,176,701 - 127,347,387
singlet/doubletdoublet
Overlap gene2310022B05Rik, Ttc13, Arv1, 2310031A18Rik, LOC668444, Trim67
Upstream geneRhou, LOC100042484, LOC100042490, Rab4a, 1700054N08Rik, LOC100043296, Acta1, Nup133, Abcb10, Taf5l, AK122209, LOC100042530, LOC100042535, Galnt2, Pgbd5, Cog2, Agt, Capn9
Downstream gene2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax, Disc1, Sipa1l2, 4933403G14Rik, 2310079N02Rik, E330039K12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-325O08.T7 (MSMg01no325_o08.b1)MSMg01-325O08.TJ (MSMg01no325_o08.g1)
ACCAG443664AG443665
length727741
length of high quality
(start - end)
276 (45 - 320)387 (74 - 460)
definitionCHROMAT_FILE: MSMg01no325_o08.b1 PHD_FILE: MSMg01no325_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:29 2005CHROMAT_FILE: MSMg01no325_o08.g1 PHD_FILE: MSMg01no325_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:10:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,347,115 - 127,347,387)(127,176,701 - 127,177,087)
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGAATCCGCGGA
ATTCTCTGACATTCCCTTCTCCCTGAGGCTGTGGCCACCACCACCACTAT
CTCCCCAGGAAGTGCTCTCTCCTGAGGGCCCAGGCTGGCAGACTCTCTTT
GTCTTTGTAGTCAAGGTGCTTGTCTTAGAGCAGCGGCCTCACAGGCCTGT
CCTACAGGGTTCTCAGACAGCACAGGCCTCCCTGGAAACTGCCCTTGACT
GGCAGCAGCTAGCTCACCCGGAACTGCCCTCCATCGCCATCATCCAGCTC
CAGGATGTAGCCTTCGGCAGGTCTGTGGGTGAATGGCGGAGTCCTCCAGG
CCAGGGTGACGCTGTTGTTGCGGGTGCAGCACTTCTCCAGCTGCAGCAGG
GGTACAGGTGGCACTGCGAACGGGATCATTCTGGTCAGCACACAGAACCC
TCCTGCAGACCCCAGGCCACCCCGACCCATGCAAACCCTTGGGACCTGTG
GCACAAGGAAGGAAGTTCTCTTTTCCGTCTGCCCACCAAGAGCAGGGGTT
GGCTCCCAAGTCATGTGGCATACCAAGTGACCTCAGCACGGTCCGTACCG
CGCATGTTACATGTTGTATGGTCCCCTGTGGGGGCTCAGATGGCAAATGG
CAGGTAACCATTGAGAGTCAGCCCGTGACTCACACCTGAGCTGGAAACAG
AGGTGCTATGTCTCGAGTTTAATGCCC
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTAAGGATGGGGGAACGAGGAAACCAA
GCTCCACAAGGCACAGGAACACAGGAAGCCTTTTCCCTGGCCCATCCCCA
GAGGTGGAGAAGCCCAAGTCCCATAGCTGTGAGCTCAGAACCTCTGCACA
AGCTAGGTCCTCACGTACCCCACCCAATTTACACAGCTTCCCCATTCCTG
CTCCTAGAGCATCCCAGTGTGGGAAGTGGAGCCCTGGGTCTTCTGGGATG
GAGGCACCAAGAATAAAGCTGCCTCAGTGAAAGTCCCTTACCCTGGGGCA
TGAATAGTTGGTGGCTGTACAGTAAGGGCTATCCCATCTGTGGTTCCTGG
AGCTAAGGGCTGGGCACCCCACCAGGGGCTGCAAACTTGTGCTCAGGTCC
TTTCCTCCAGTGGGTATGCAGAGTGTCTGGGGACTGCACGTTAACACTGG
AGAAAGCCTGTTTGCTTAGATACATGTTATACCAAGACCACGTCACAGAC
AGTCTATCCCCAGACCTGTGTATGCTGCAGCAGTAAATGGGGCCAGGCAT
TAATAGAGCCCAAAAGTCTCCTCAACTTCCCCGTTTGATACTGCCCCCCA
TTAAATACGCCTCTGGTCCCAACCCAGTGACTAATTCCCAATTTGGCAAC
ATCCGGTTGGGGGAACTTTGGGCTCCAGAAACTGGAATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no325_o08.b1 MSMg01no325_o08.b1 CHROMAT_FILE:
MSMg01no325_o08.b1 PHD_FILE: MSMg01no325_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:29 2005
         (276 letters)



>mm_chr8_127346912_127347587
          Length = 676

 Score =  482 bits (249), Expect = e-140
 Identities = 267/273 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctgacattcccttctccctgaggctgtggccaccaccaccactatctcccca 63
           ||||||||||||||| | |||||||||||||||||||||||||||||  |||||||||||
Sbjct: 476 ggaattctctgacatacacttctccctgaggctgtggccaccaccactgctatctcccca 417

                                                                       
Query: 64  ggaagtgctctctcctgagggcccaggctggcagactctctttgtctttgtagtcaaggt 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 ggaagtgctctctcccgagggcccaggctggcagactctctttgtctttgtagtcaaggt 357

                                                                       
Query: 124 gcttgtcttagagcagcggcctcacaggcctgtcctacagggttctcagacagcacaggc 183
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gcttgtcttagggcagcggcctcacaggcctgtcctacagggttctcagacagcacaggc 297

                                                                       
Query: 184 ctccctggaaactgcccttgactggcagcagctagctcacccggaactgccctccatcgc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 ctccctggaaactgcccttgactggcagcagctagctcacccggaactgccctccatcgc 237

                                            
Query: 244 catcatccagctccaggatgtagccttcggcag 276
           |||||||||||||||||||||||||||||||||
Sbjct: 236 catcatccagctccaggatgtagccttcggcag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 676
Length adjustment: 9
Effective length of query: 267
Effective length of database: 667
Effective search space:   178089
Effective search space used:   178089
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no325_o08.g1 MSMg01no325_o08.g1 CHROMAT_FILE:
MSMg01no325_o08.g1 PHD_FILE: MSMg01no325_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:10:29 2005
         (387 letters)



>mm_chr8_127176501_127177287
          Length = 787

 Score =  687 bits (355), Expect = 0.0
 Identities = 379/387 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaggatgggggaacgaggaaaccaagctccacaaggcacaggaacacaggaagccttt 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 ctaaggatgggggaacgaggaaaccaagctccacgaggcacaggaacacaggaagccttt 260

                                                                       
Query: 61  tccctggcccatccccagaggtggagaagcccaagtcccatagctgtgagctcagaacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccctggcccatccccagaggtggagaagcccaagtcccatagctgtgagctcagaacct 320

                                                                       
Query: 121 ctgcacaagctaggtcctcacgtaccccacccaatttacacagcttccccattcctgctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcacaagctaggtcctcacgtaccccacccaatttacacagcttccccattcctgctc 380

                                                                       
Query: 181 ctagagcatcccagtgtgggaagtggagccctgggtcttctgggatggaggcaccaagaa 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 ctagagcatcccagtgtgggaagtggaaccctgggtcttctgggatggaggcaccaagaa 440

                                                                       
Query: 241 taaagctgcctcagtgaaagtcccttaccctggggcatgaatagttggtggctgtacagt 300
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 taaagctgccccagtgaaagtcccttaccctggggcatgaatagttggtggctgtacaat 500

                                                                       
Query: 301 aagggctatcccatctgtggttcctggagctaagggctgggcaccccaccaggggctgca 360
           ||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||
Sbjct: 501 aagggctatcccatctgtggttcctggagctaagggctgggcacagcagcaggggctgca 560

                                      
Query: 361 aacttgtgctcaggtcctttcctccag 387
           | |||||||||||||||||||||||||
Sbjct: 561 agcttgtgctcaggtcctttcctccag 587


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)