BAC Information

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BAC

Clone NameMSMg01-328I11
Chromosome8 (Build37)
Map Location 83,135,440 - 83,334,972
singlet/doubletdoublet
Overlap geneFrem3, Smarca5, Gab1, LOC666237
Upstream geneOtud4, Tpd52-ps, Abce1, Anapc10, LOC100039439, Hhip, LOC546075, Gypa
Downstream geneLOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852, Inpp4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328I11.T7 (MSMg01no328_i11.b1)MSMg01-328I11.TJ (MSMg01no328_i11.g1)
ACCAG445602AG445603
length763807
length of high quality
(start - end)
346 (73 - 418)343 (74 - 416)
definitionCHROMAT_FILE: MSMg01no328_i11.b1 PHD_FILE: MSMg01no328_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:42 2005CHROMAT_FILE: MSMg01no328_i11.g1 PHD_FILE: MSMg01no328_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:42 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,135,440 - 83,135,783)(83,334,630 - 83,334,972)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGTACTCCGCGGA
ATTCCACGCTGGTTGCCACCTTCACTCTGCAAGTGAATGTAGTCTTCCCC
AAGCTTCAGTTGGTGGCGCGCAACAGGCCACTGAAAGTGTTTAAAGTGCT
AGGCTGCAGCCATGCCATCGACAGGAGAGTGCTAAACTTTGCCTCCAGGA
GCAGGTGCAGGCTCACCGTGCTTCCTCACCCTGGCGGACCACTCCCCAAG
TATGGACTCTTGGTGGACACCGCTGGGAACCCTCTCTCCAGGGGCCATCT
GGCCGACTGTGAGGCTTTTATCCATTCTGGCGTACGCTACCAGCATACCA
CCACACCATCCTCACCCAGCAGGGACTATGTGCCCATGCTAGTGGAGCTG
CTTGGACCAGAGTCACCCCCCACTACCCCAGTGGAGGTGCTGGCCCAGGA
GTACTTCCAAATTCAAGTCAGAATCCAGAAGCGAGCCAGGAGCACAGCAC
CAATACCTAGTCTCGCGGCTCTAATGATAGTGGAAGTTGAACAGTCCTTA
CTGACAGCCCTGACAACTGATGTGCTGGCTGCAGAAAACAGCGAGTCAGA
CCCTGACGACCTAGACTTCATAATTCTCAATGTACCCGAGGTCCCACCTG
TACACCACGGTGAACAGTGTTATGTGCTGAACTCCTATGACCCCCTGTGC
CTTCCAGTCCTTTTTCTTTACCCAGAATCAGCTTTCTCATTATTGTAAAT
ATCCCTATTGTAG
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTTCCTTCTTTGTGAAGAGGCTGCTG
TTCTGAGCTCTGCTTTGTACCTGGTGGCTGGCTTTGGTTGGATAAGGTCA
ATTACTTTGTATGGTGCAGGAAGCAGTTCCTGAGCGGGTGACTCGAGAGA
GCATGATTTATCTCTTTGGAACTACTTTTCCCAAGGAAACTCATAACTGC
CTCATACCTTTTGCCTGGAAGCCTTAAACTAAGTTGTACATTCAGAAGAG
AGTGGTATTGAGCGTCATCCAGACTTAGTTCATATTAATACCATTATGGC
AATTTGTTTTGAAATGTTTTCAGTGATTCATATGAAAGTGATGTTTTTGA
ACTGTGTCCCAATTTTTCCCCCCCCCCCGATTTTGTTTGTTTGTTTGTTT
CTATGGTTATGCTTGTGCGCCCTGTGCTTGCATGTCCTCCTTTTGCATAT
ATCTCCATAGATATCCCCACTATGCTTTTCCCCCTTTATTCGTCTTTTCT
ATTTACCTCTTGTTTTTTTTTCTTTACGCCCACACTTCTACCTCTTTTCC
CTCACTTTCTTCTTTATCCTCTATCATTTATTCTACAACCAATATTATCA
TGTATAACTTTATCCCCCTTAATATTCTTATTTCTCCCTCTTGTCACTCA
CTTTCCCCTCTTTCTCCTTCTTTTTCCTCCACTATTCCCTCTTTTTTAAA
ATCATTTTTTTTACTTATTTCTTTAAGTATTACCATACCTCACTTCTTTT
TCTTATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_i11.b1 MSMg01no328_i11.b1 CHROMAT_FILE:
MSMg01no328_i11.b1 PHD_FILE: MSMg01no328_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:42 2005
         (346 letters)



>mm_chr8_83135240_83135985
          Length = 746

 Score =  650 bits (336), Expect = 0.0
 Identities = 342/344 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactctgcaagtgaatgtagtcttccccaagcttcagttggtggcgcgcaacaggccact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactctgcaagtgaatgtagtcttccccaagcttcagttggtggcgcgcaacaggccact 260

                                                                       
Query: 61  gaaagtgtttaaagtgctaggctgcagccatgccatcgacaggagagtgctaaactttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaagtgtttaaagtgctaggctgcagccatgccatcgacaggagagtgctaaactttgc 320

                                                                       
Query: 121 ctccaggagcaggtgcaggctcaccgtgcttcctcaccctggcggaccactccccaagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctccaggagcaggtgcaggctcaccgtgcttcctcaccctggcggaccactccccaagta 380

                                                                       
Query: 181 tggactcttggtggacaccgctgggaaccctctctccaggggccatctggccgactgtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggactcttggtggacaccgctgggaaccctctctccaggggccatctggccgactgtga 440

                                                                       
Query: 241 ggcttttatccattctggcgtacgctaccagcataccaccacaccatcctcacccagcag 300
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcttttatccaggctggcgtacgctaccagcataccaccacaccatcctcacccagcag 500

                                                       
Query: 301 ggactatgtgcccatgctagtggagctgcttggaccagagtcac 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggactatgtgcccatgctagtggagctgcttggaccagagtcac 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space:   248369
Effective search space used:   248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no328_i11.g1 MSMg01no328_i11.g1 CHROMAT_FILE:
MSMg01no328_i11.g1 PHD_FILE: MSMg01no328_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:42 2005
         (343 letters)



>mm_chr8_83334430_83335172
          Length = 743

 Score =  656 bits (339), Expect = 0.0
 Identities = 342/343 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acttccttctttgtgaagaggctgctgttctgagctctgctttgtacctggtggctggct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 acttccttctttgtgaagaggctgctgttctgagctctgctttgtacctggtggctggct 484

                                                                       
Query: 61  ttggttggataaggtcaattactttgtatggtgcaggaagcagttcctgagcgggtgact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 ttggttggataaggtcaattactttgtatggtgcaggaagcagttcctgagcgggtgact 424

                                                                       
Query: 121 cgagagagcatgatttatctctttggaactacttttcccaaggaaactcataactgcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cgagagagcatgatttatctctttggaactacttttcccaaggaaactcataactgcctc 364

                                                                       
Query: 181 ataccttttgcctggaagccttaaactaagttgtacattcagaagagagtggtattgagc 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 363 ataccttttgcctggaagccttaaactgagttgtacattcagaagagagtggtattgagc 304

                                                                       
Query: 241 gtcatccagacttagttcatattaataccattatggcaatttgttttgaaatgttttcag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gtcatccagacttagttcatattaataccattatggcaatttgttttgaaatgttttcag 244

                                                      
Query: 301 tgattcatatgaaagtgatgtttttgaactgtgtcccaatttt 343
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tgattcatatgaaagtgatgtttttgaactgtgtcccaatttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)