BAC Information

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BAC

Clone NameMSMg01-328I12
Chromosome8 (Build37)
Map Location 83,135,632 - 83,135,771
singlet/doubletsinglet
Overlap geneFrem3
Upstream geneOtud4, Tpd52-ps, Abce1, Anapc10, LOC100039439, Hhip, LOC546075, Gypa
Downstream geneSmarca5, Gab1, LOC666237, LOC100039496, LOC234501, LOC100039518, Usp38, EG70793, LOC236010, LOC384852
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328I12.T7 (MSMg01no328_i12.b1)MSMg01-328I12.TJ (MSMg01no328_i12.g1)
ACCAG445604AG445605
length732752
length of high quality
(start - end)
141 (262 - 402)---
definitionCHROMAT_FILE: MSMg01no328_i12.b1 PHD_FILE: MSMg01no328_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:42 2005CHROMAT_FILE: MSMg01no328_i12.g1 PHD_FILE: MSMg01no328_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAAGAGAATCCGCGGAAT
TCCACGCTTTCCCTGACCTTCACTCTGCAAGTGAATGTAGTCTTCCCCAA
GCTTCAGTTGGTGGCGCGCAGCAGGACACTGAAAGTGGTTAAAGAGCTAA
GGTGCAGCCATGCCATCGACAGGAGAGGGCTAAACTTTGCCTCCAGGAGC
AGGTGCAGGCTCACCGTGCTTCCTCACCCTGGCGGACCACTCCCCAAGTA
TGGACTCTTGTGGGACACCGCTGGGAACCCTCTCTCCAGGGGCCATCTGG
CCGACTGTGAGGCTTTTATCCAGGCTGGCGTACGCTACCAGCATACCACC
ACACCATCCTCACCCAGCAGGGACTATGTGCCCATGCTAGAGGAGCTGCT
TGGAGCAGAGCCCCCCCCCCTAGGTCAGTGGAGGTGCTGGCCCAAGAGTA
CTTCCATATTCAAGTCAGAATCCAGAAGCGAGCCAGGAGCACAGCACCAA
TACCTAGTCTCGCGGCTCTAATGATAGTGGAAGTTGAACAGTCCTTACTG
ACAGCCCTGACACCTGATGTGCTGGCTGCTGAATACAGCGAGTCCTATCC
TGACGACCTAGTCTTCAACATTCTCAATGTACCCGAGGCCCCACCTGGAC
CCCATGTAGCACAGGGTTTATGTGTCTGAAACAGTATGACCCCCTGTTGC
CTTCCCGTCCTCTTTCTTTAACCCACAATAAT
TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTTCCTTCTTTGTGAAAAGGCTGCTG
ATCTGAGCTCTGCTTTGTACCTGGTGGCTGTGTTTGGTTGGATAAGGTCA
ATTACTTTGTATGTTGCACGAAGCACTTCCTGAGCGTGTGACTCGAGAGA
GCATGATTTATCTCTTTGGAACTACTTTTCCCACGGAAACTCATAACTGC
CTCATACCTTTTGCCTGAAAGCCTTAAACTAAGTTGTACATTCAGAAAAG
AGTGATATTGAGCGTCATCCAGAGTTAGTTCATATTAATACCATTATGCC
AATTTGCTATGAACATGTTTCCACTGATTCATATGAAAGTGATGTTTTTG
ATCTGTGTCCCAACCCCCCCCCATAATTTGTTTTTGTGTGTTTGCTTGTT
TCTATGGGTATGCTTGTGAGCCCAGTGCGTGATTGCTCACTATCGTGCGC
TCGAGCCCTCAAATTTTAGAACATGTGTTTCGCCTGAAGCTGCGATTTCT
TATGTTATGTATCTATCGTTTGATTGGTTCTACCTGCCTCCCCCCACTTT
GCCTATTATGCTGCGTGCTTTTTTATTTTCTCCCCATCTTTTCTGCCGCC
TATCGACTTACCCCATTTGTCCTGTGTTCCCTTTTACCCCATAGGTATAT
CCTACCACCTTTTTTTATTACTAACTTTCTTTTATTTAATATTATTTCTT
TG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_i12.b1 MSMg01no328_i12.b1 CHROMAT_FILE:
MSMg01no328_i12.b1 PHD_FILE: MSMg01no328_i12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:42 2005
         (141 letters)



>mm_chr8_83135431_83135971
          Length = 541

 Score =  263 bits (136), Expect = 3e-75
 Identities = 139/140 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggacaccgctgggaaccctctctccaggggccatctggccgactgtgaggcttttatcca 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggacaccgctgggaaccctctctccaggggccatctggccgactgtgaggcttttatcca 261

                                                                       
Query: 62  ggctggcgtacgctaccagcataccaccacaccatcctcacccagcagggactatgtgcc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ggctggcgtacgctaccagcataccaccacaccatcctcacccagcagggactatgtgcc 321

                               
Query: 122 catgctagaggagctgcttg 141
           |||||||| |||||||||||
Sbjct: 322 catgctagtggagctgcttg 341


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 141
Length of database: 541
Length adjustment: 8
Effective length of query: 133
Effective length of database: 533
Effective search space:    70889
Effective search space used:    70889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)