BAC Information

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BAC

Clone NameMSMg01-328L04
Chromosome8 (Build37)
Map Location 34,168,444 - 34,168,679
singlet/doubletsinglet
Overlap geneLOC628408
Upstream gene2010007E15Rik, EG666589, EG546052, LOC100042715
Downstream geneEG628412, Wrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-328L04.T7 (MSMg01no328_l04.b1)MSMg01-328L04.TJ (MSMg01no328_l04.g1)
ACCAG445729AG445730
length768843
length of high quality
(start - end)
376 (46 - 421)240 (80 - 319)
definitionCHROMAT_FILE: MSMg01no328_l04.b1 PHD_FILE: MSMg01no328_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:55 2005CHROMAT_FILE: MSMg01no328_l04.g1 PHD_FILE: MSMg01no328_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:13:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATACCGCGGA
ATTCATTGTTCCAGTGCACTGGGGCCCTCTCAGACCAGTGGGAGAGGCGG
AGACCCCACGCAACTCGAATGAGCTTTTTATACAGTTTTCAGGGCAGCAG
CACAATGTGATTGGTAGAACAGTGTGACTTTTTAAACTGCTTGGTCTTTA
GGGGATGAGGTGGCAAGGACTTCCCTTGTCTGAAGGTGGGTAAAGATCCG
TCCTGTGGAATGTGTGGAATGTGTTGGTACCACACACACACCCACCCCGC
CCTGTCCCCGCTGTGGTCTGAGAAATGTTAATTAGCCTCTCCCTCCCAGA
GGGGCAAGTGTTCCATGACCGTCCCAAAGTTCCCAAGGTGATGGTTTCAT
CAGGATCTAGCCTAAGCTGTTTCCCCCCCTTAGGCGTATGGATCCTTCGT
CATCTCTACAATTCTATCTAGATGGTTCGGTCACCTCTGCCTTAAAATTG
TATGAACCACAAGGCTTCCCTTTATTTTTCTAGCCGTCAGCTTTCCCTAC
CATACAGTTCTTATCTTGCTCTGCTACATATTACCTAGGTCTATTGGTTT
TAATTCCTTTATTAACCTTTAGCCATTTTCTAAACGCCCCTCTTCTCCTC
TTTTTTTACCTTCTCTTCGTCTCCCACCTCTCCTTATTTTCTTGCTATCA
CCCTGTCTTCTTCTCTATCACCCGCACTCCTTAACTATGTTTCTACGCTC
CCCCCTTCCTCTTATTAT
CAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTGCCGNAAAACACTCTGGGGGGGGGGGAGGCAACC
AGATCTTGGGGTTCAGAATTTAGCATTTGTATGCACAGCACCAGACCAAC
CCCCAACAAAATAGTAAACACAAATAAGAAAAGTGAATAGCATATTAGGT
GATAGGCACTGGAAGATTAAGATAAAACAGCAAGACAGAGAAGATTAGGG
CCCTGCAGGGTGTTAAAAACAATAGGTTCTTTGTAACCTTAGTAAGGATT
GGCCAGGGAAAGACTCACTGGGGCGGTTTTATTATTTATCCGAAAGAAGG
ATCCAACCAAAGGACTTTCTTTATTCGTTCCTTCTAAAGACTGGTACTTT
CTATAATTATTTTCCTATAGGTTACCCCCCCCCGCCATAGAGAAGACCTT
ACTTTTTACACTTACTTATTATACTCCCCCACATCACGCTGCGAGACGCA
TAACCCTCCACATCTCTGTTATTTAGACCCTCCTTCGCTGTACTTTCGAC
AGTTTTCCATACACCTGCCCTATAATATCCTTTTCTATTATCCTCCTTCT
CTCGCAATGCCCCCTCTTCCTACTTCCTCTAAATTATTTCTTTATTACCC
TATAACATTCTCCTTCCCTTCTTACACTATTCCCCTCCCCTCCTTTTTTA
TTTGTCTCCCAATAGATTTACCCCATAAATTGTTCCTCCCTTCTTTCTCT
CATTAATTCCCCTCCGCTTAACCCTTCCTATGCTTTTTTTCGTTCTTATC
TCCACACTTCTCTTTCTATCTCACCCCGATTTCTCATCTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no328_l04.g1 MSMg01no328_l04.g1 CHROMAT_FILE:
MSMg01no328_l04.g1 PHD_FILE: MSMg01no328_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:13:55 2005
         (240 letters)



>mm_chr8_34168242_34168881
          Length = 640

 Score =  441 bits (228), Expect = e-128
 Identities = 234/236 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   gggggggggggaggcaaccagatcttggggttcagaatttagcatttgtatgcacagcac 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gggggggggggaggcaaccagatcttggggttcagaatttagcatttgtatgcacagcac 262

                                                                       
Query: 63  cagaccaacccccaacaaaatagtaaacacaaataagaaaagtgaatagcatattaggtg 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cagaccaacccccaacaaaatagtaaacacaaataagaaaagtgaatagcatattaggtg 322

                                                                       
Query: 123 ataggcactggaagattaagataaaacagcaagacagagaagattagggccctgcagggt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ataggcactggaagattaagataaaacagcaagacagagaagattagggccctgcagggt 382

                                                                   
Query: 183 gttaaaaacaataggttctttgtaaccttagtaaggattggccagggaaagactca 238
           | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 383 ggtaaaaacaataggttctttgtaaccttagtaaggattggtcagggaaagactca 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)