BAC Information

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BAC

Clone NameMSMg01-329F06
Chromosome8 (Build37)
Map Location 7,297,803 - 7,297,946
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665127, EG546032
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329F06.T7 (MSMg01no329_f06.b1)MSMg01-329F06.TJ (MSMg01no329_f06.g1)
ACCAG446191AG446192
length795785
length of high quality
(start - end)
144 (45 - 188)339 (77 - 415)
definitionCHROMAT_FILE: MSMg01no329_f06.b1 PHD_FILE: MSMg01no329_f06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:44 2005CHROMAT_FILE: MSMg01no329_f06.g1 PHD_FILE: MSMg01no329_f06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:14:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACTCCTATTTCGAGAGGATCCGCGGAATTCATATCCTGACCATCTCATG
GAACTCTCCAAGCATCTAACATAAAGAAATTAAGTTAAGGTACAGCTTTG
CTTATTTTATTCTCTTTTTAAAAGTAACTGTTCCTTAAAACACATTCTTA
TAGGGAATATTTTGTTTTTATAGGATATGTAAAATGGGAGGGCTGCAGAA
CAGGTGCAGGAAGGACATTTATCAACAGCTGATACTGTGTGATAACCTGT
TCGACTTGACTTCTATCCATATCATTTAATAATGGAAATAGTAACTTCTT
TACAACCAAACACATTTTGCCTTGTCTTTGCACTCACACTCTATTTATAT
AGGACGCTTGCCGCTCCTCCTTCTAATATTTTTGTCCATAATTTTGCCCC
CCCCCCCCTATTTTTTTTTTTCATTTTTTACCACTCCAATTTCCATCTTC
TACATCCTTCCCCTTTTTTCCCCTTTTTTCCCTCCCTTTTCCCTTCTTTC
CTCCTTCTCCTTATTTCTCCCTTTTTCCCTCCTCTTCCCGTCATCCATTA
CTGTTCCCTTTTTTTCCTTCCCTTTCTTTTTTTATTTCACACACCTTCTA
TTTTTTCATTTTTTTTTTCCCTTTTCCCCCCCTTCTCTTCCTTTTTCCCC
TCCCCTATTATTCCCCTTCCCCCTCTTTCCCCCCTTTTTTTTCTTTTATT
TCCCCCTCCCCCATTTTTTCCTTTCTATTCCTCCCGTCCCTACATTACTT
TCCACCTTTACTATTCCCCATTATATTCTTTGAACCTTTCGTCTG
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTGAAAAGGTTATCTGTTCAGTA
GCATTCAAATTTACTTTTAGTAGAGACAGTGAAACTAACTAGGCATTACA
AAGAACAGAGCTAGAATAGCTCAGGGCTAGTCTGCAGAGTGATTACTTAG
GACAGTAGCCAGTCTTACCCAAACCAGGGAATACACAATGGCTTAGCTAA
TAGGTAGGTTTACCATGTAAGAGTTAGGGAATCCCACTGAGACTGGAAAC
TTCACTACAGCCAGGTATAGCAGGCTACACTGCATATTAGAAGCAAGTTG
GTGAATTCTTCTGACAAGTGGAGATTCTCCACAGATACTTAAAAGAACAG
CCAAGTTACACTCATTCTCCCCCCCACCATGGCCTACGAAATGGAGGGCG
CTTTGCTTCTTTCCTCTCTCTCTCTTCCTCCCTCTTACCTCACTCTTTTT
TCCATTTTTCCTTCCCCTCTCCCCCTTTTCCTAACCTTTTTTCTTTCCCC
ATTTTCCTTCCTTTTTCCCTTCTTTTCTATCTTTAACCTCGCCCATAAGA
TTTTTCCTCCCTTCTTTTTTTCCTCGTTTTTCTTTTACCTCTTCGTTCTT
TTTTTTTACCCCCCGTTTTTCCTTTTTGTTTTCCCTCTTTTCCTTCCTTG
TCGTCCTTCTTTGTCCCCTCATTCCTCCTTATTTCCTTCTCCTACCTTTC
GTTTTCTTTCTTCCTTTTCCTCCTCGTTTTCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_f06.b1 MSMg01no329_f06.b1 CHROMAT_FILE:
MSMg01no329_f06.b1 PHD_FILE: MSMg01no329_f06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:14:44 2005
         (144 letters)



>mm_chr8_7297603_7298146
          Length = 544

 Score =  263 bits (136), Expect = 3e-75
 Identities = 142/144 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcatggaactctccaagcatctaacataaagaaattaagttaaggtacagctttgctta 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcatggaactctccaagcatctgacataaagaaattaagttaaggtacagctttgctta 260

                                                                       
Query: 61  ttttattctctttttaaaagtaactgttccttaaaacacattcttatagggaatattttg 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttattctcttttttaaagtaactgttccttaaaacacattcttatagggaatattttg 320

                                   
Query: 121 tttttataggatatgtaaaatggg 144
           ||||||||||||||||||||||||
Sbjct: 321 tttttataggatatgtaaaatggg 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)