BAC Information

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BAC

Clone NameMSMg01-329L21
Chromosome8 (Build37)
Map Location 122,673,024 - 122,842,579
singlet/doubletdoublet
Overlap gene6430548M08Rik, 1700120B06Rik
Upstream geneCdh13, Hsbp1, Mlycd, Osgin1, Efcbp2, Gm587, Mbtps1, Hsdl1, Lrrc50, Taf1c, EG628061, 4930403J07Rik, Kcng4, Wfdc1, Atp2c2, 4632415K11Rik, Cotl1, BC025816, Usp10, Crispld2, Zdhhc7
Downstream geneGse1, 4833427B12Rik, LOC668301, 1190005I06Rik, Cox4nb, Cox4i1, Irf8, LOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-329L21.T7 (MSMg01no329_l21.b1)MSMg01-329L21.TJ (MSMg01no329_l21.g1)
ACCAG446486AG446487
length847874
length of high quality
(start - end)
278 (61 - 338)249 (128 - 376)
definitionCHROMAT_FILE: MSMg01no329_l21.b1 PHD_FILE: MSMg01no329_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:18 2005CHROMAT_FILE: MSMg01no329_l21.g1 PHD_FILE: MSMg01no329_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(122,673,024 - 122,673,301)(122,842,333 - 122,842,579)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTGCGTGACTCCGCGGAATTCCCACT
GGGTTTGCCCCATTCGACGCTCAAGCCATATCTGGACCTTGAAGTCAGGC
TCCTGGTTTCAGAAATAAATGCAAGACACTGTTCCCTGGAAGGCGCTGAG
AGTTGGGGACGCACCCCACTGTCCTCCATCCCCTCCTAGAGGACCTGGGT
CCATGTTTTTGTTCTGCCCTTCCTCCAGGGAGGACTTGGACCAGGAAGAG
AAAGCCAAGTTTGGGGAGTACTGCAGCGGAGAAGACGGGAAAGGCCGGGA
ATGGTTCGCACGCTTTGTGAGCGCACAGGTGAGGTGGGGGTGGGGGTGGT
TTACCCCTTTCCCTCCCTCCCCCAATAATTCCCCCCACTCTTTTTCATTC
TTGATTTCTCCCCTACTCCCCTGTTTTCATTTTTATTCCTTCCTTCCACC
CACCCATCTCTACCCCTTTTTTTTTTTATCCTTTACCCTTTTTTTTCTTT
TCTCTTTTTCCTTTCCACCTTCTTACCTTTTTTCTTCCCTCCCTTTATCC
ATTTTCCTCTTTCTTTCCCTCTTTTTTCCCTCCCCTTTCTTTTTTTTTTT
TCTCCCCCCCTTTTTTCTTTTCCCCTCCCCTTTTATTTCCCCCTCTCCCC
CCCTTATCCTTTTTTTCTCACCCACCTCCTATTTTTTTCCCTATCCCATA
CTTTTCCTTTTTTGCCCCCTTCGCCCTCCCTTCCCCCCCTTTCCCTCCCC
CTCTTCCCTTTTCTTTTTTTTTTTTTTCCCCCCTTCCGCACTTTTCCCTT
TCCCCCCCCTCCCCTCCCCTTTTACCCCCCCCCCCCACTTTCACTTT
CCTTCCCCCTTTCTTCCTTTTTTTCCTCCATTTTCCCCCCTCACTCCTNN
NTTCCATGCTATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTAGGGTCATCCCCTGAACAG
GTAGGATAAATCTCGGCTGGTCTCTGTCAGAACTTGGCTGAGTCATTGGG
GATTAAATTAATAATGATTAATTGGAGGCTCCTGAAGGCTGAACGGCTGG
GAAGAAGATTAGAGCGCACTCAAGCAGTCTTTCCTCCCTCTCCTCCTCCT
CCCCCTCCTCCATCCTCCCTCCTTCTCCTCCTCCTCCTCCTCCTCTTTGA
TTTCTTCTTTCCCTTCTCAGCCCATCTTTCTTCTCAGGACATTCAGACGT
CAAACTGGAATACTACTGCTGACGTATGATATGGCAGCCTTGCCAGTGTC
TAATCGGTTTCGTGGTCGGCTAACTGTCCTAGAGAAATCTCGGTTCTATC
CGGCTTTCCTCTGTATAACGGGCTGGGCATCTGCCCACCCCTCCCACCTC
CCCATAATGTGAGTCCCAGAGTTCCGATTCCTGTCTAGTCCCTTTGTCGC
CTTTGTTCTCTCAGACCTTATGTTTATTTCTTTGTCCGCAATCGGCTTCG
CTTTTCTGTACTTTTCGTTTTTTCGACACCCTGTTTCCGAAAATCTTTCG
TCCGCCGTTCATCGTCATTAAACGGTCCATACTTCCCCTTCCTCGCCGGT
TTTTTTCTTTTCCCCCGCCCCTTATTTCCGATACTTCTTGACACTCCTGT
TTTCTCCACCTGTTGTTCTTTCAGCAGCTGTTCTTTCCCTCGTTCATTTT
TTCAAGTGATTTATTTTTTAACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no329_l21.b1 MSMg01no329_l21.b1 CHROMAT_FILE:
MSMg01no329_l21.b1 PHD_FILE: MSMg01no329_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:18 2005
         (278 letters)



>mm_chr8_122672824_122673501
          Length = 678

 Score =  530 bits (274), Expect = e-155
 Identities = 277/278 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattcgacgctcaagccatatctggaccttgaagtcaggctcctggtttcagaaataaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattcgacgctcaagccatatctggaccttgaagtcaggctcctggtttcagaaataaat 260

                                                                       
Query: 61  gcaagacactgttccctggaaggcgctgagagttggggacgcaccccactgtcctccatc 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 gcaagacactgttccctggaaggcgctgagagttggggacacaccccactgtcctccatc 320

                                                                       
Query: 121 ccctcctagaggacctgggtccatgtttttgttctgcccttcctccagggaggacttgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctcctagaggacctgggtccatgtttttgttctgcccttcctccagggaggacttgga 380

                                                                       
Query: 181 ccaggaagagaaagccaagtttggggagtactgcagcggagaagacgggaaaggccggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccaggaagagaaagccaagtttggggagtactgcagcggagaagacgggaaaggccggga 440

                                                 
Query: 241 atggttcgcacgctttgtgagcgcacaggtgaggtggg 278
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atggttcgcacgctttgtgagcgcacaggtgaggtggg 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no329_l21.g1 MSMg01no329_l21.g1 CHROMAT_FILE:
MSMg01no329_l21.g1 PHD_FILE: MSMg01no329_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:18 2005
         (249 letters)



>mm_chr8_122842226_122842874
          Length = 649

 Score =  455 bits (235), Expect = e-132
 Identities = 244/247 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgttagggtcatcccctgaacaggtaggataaatctcggctggtctctgtcagaacttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tgttagggtcatcccctgaacaggtaggataaatctcggctggtctctgtcagaacttgg 295

                                                                       
Query: 61  ctgagtcattggggattaaattaataatgattaattggaggctcctgaaggctgaacggc 120
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ctgagtcattgaggattaaattaataatgattaattggaggctcctgaaggctgaacggc 235

                                                                       
Query: 121 tgggaagaagattagagcgcactcaagcagtctttcctccctctcctcctcctccccctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 tgggaagaagattagagcgcactcaagcagtctttcctccctctcctcctcctccccctc 175

                                                                       
Query: 181 ctccatcctccctccttctcctcctcctcctcctcctctttgatttcttctttcccttct 240
           ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 174 ctccatcctcccttcttctcctccccctcctcctcctctttgatttcttctttcccttct 115

                  
Query: 241 cagccca 247
           |||||||
Sbjct: 114 cagccca 108


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)