BAC Information

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BAC

Clone NameMSMg01-330B06
Chromosome8 (Build37)
Map Location 64,086,316 - 64,277,788
singlet/doubletdoublet
Overlap genePalld, LOC100040872
Upstream geneMfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1, Sh3rf1, EG664975, Cbr4
Downstream geneBC013672, Anxa10, LOC100040775, LOC384830, LOC100040804, LOC665267
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330B06.T7 (MSMg01no330_b06.b1)MSMg01-330B06.TJ (MSMg01no330_b06.g1)
ACCAG446731AG446732
length741756
length of high quality
(start - end)
284 (72 - 355)288 (77 - 364)
definitionCHROMAT_FILE: MSMg01no330_b06.b1 PHD_FILE: MSMg01no330_b06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:44 2005CHROMAT_FILE: MSMg01no330_b06.g1 PHD_FILE: MSMg01no330_b06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:15:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,277,505 - 64,277,788)(64,086,316 - 64,086,603)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACCTATGTTCCACCAGTGAAGGTCTAAGTACAGGGGTAGCGATGG
GTACAGAAACCGCACACAAAAGCTCAGCAAAAAAAAGTGAAGACATCTTG
AACCCCAGCCCAGTCCCCAGCGGGATTATTTACTTTTCTTATAAGTGTGC
AGATAGATCTCAGAAGCAACTAATGGACGAATAGTCTACTTTACCTCATA
TGTAGATAGTCCAGTCACCTATAATGGGGAAGGTGTGACATTAAGCTACA
TTCTTATGGTGACATTGGGGAGCATGAAATGACTGATCATATTGCCAACA
CAGACAGGAAATTTATTTTGACTACAACTCTCAAGGGTCTGCCCCGGCCC
CTACTGTCCCACTTCCACTAGCTAAACTCCTGCGACATCATTTTCACAAC
TTTCGATGGTGTAGAAACAGCACTGTCAAGCTTGGAATTAAATTTCTAAC
TCCATGAACCTGTGAGAGAAGCTTTCTAGTCATACCATAACAGTAGCTGG
TACTGCCCTTCCTAACTAGACAGAGCAAGCAGAGATGATGGTTATAAAGT
AGCCCCAAAATAACAAAAATGTGTAAGTGAGGGAGGGCTATAGTATAAAA
TATTCCTAGATCTGATTTTGGAAACATATGAATCACACCCCCTCACTACA
ACTTTGTATAGAGTTAATGAAGGCCTTAGTATTATTAGAAN
CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTCTCCCTTGCTCTCTGGAGTTG
AGAACAGCCAGGCATCCGAAGCAAGCCCGGAAGAATCCTTCCTGGCCTCT
CAGCTTGGATGTGTATGGAAAAAAGCTCCCCGCTCTGCATTCCCTATTTA
AGAAAGAAGCTGCCCCAGCCCCATCCAATAAAACAGAGTAGTGTTTCCTT
ACGTATAAACAACCGAGAAATTCCTCCCAAGCAAGCACACAGCCTTTTGG
GTCTTGGAACAAAGTGGCCGGTGGTATTTATTATGTCAAATAAACACATC
ATCCACACTGCAAAGGTTTTTCTGAACCCCCCCGCCGAACAAAGCAGTTT
TCCAGCTTTTATTCCCTTAGCCATTAGCCTTTGACTAACTGGACTGAAAA
ATTAAGAAGGAACAATTTTTTTTTCATAAGGTACCCTTATGCAATTACTA
TCCCCAGTTTGTTCCCAAGGCTTGTTCAAAAACAAATACATAAATCATAA
CACACTTTTACATCTCATTCATTCTCTACTCATCTTCTACACTCTTCTCT
CTCTCTCTCGTTGATACTTACTTCCTTTATAACCCAAATCCTATATTTGT
GTAGTCCACTTTTCCAGAAGGCCATAATAACCTAATTTTATACCCGGGAA
TATACCGCAAAGGTCGGGAGTATTATTGTTCCTTTAGTTTTTAGCCCACC
AAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_b06.b1 MSMg01no330_b06.b1 CHROMAT_FILE:
MSMg01no330_b06.b1 PHD_FILE: MSMg01no330_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:44 2005
         (284 letters)



>mm_chr8_64277489_64278172
          Length = 684

 Score =  518 bits (268), Expect = e-151
 Identities = 280/284 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaaggtctaagtacaggggtagcgatgggtacagaaaccgcacacaaaagctcagcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 300 tgaaggtctaagtacaggggtagcgatgggtacagaaaccgcacacaaaagtttagcaaa 241

                                                                       
Query: 61  aaaaagtgaagacatcttgaaccccagcccagtccccagcgggattatttacttttctta 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 240 aaaaagtgaagacatcttgaaccccagcccagtccccagcaggattatttacttttctta 181

                                                                       
Query: 121 taagtgtgcagatagatctcagaagcaactaatggacgaatagtctactttacctcatat 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tgagtgtgcagatagatctcagaagcaactaatggacgaatagtctactttacctcatat 121

                                                                       
Query: 181 gtagatagtccagtcacctataatggggaaggtgtgacattaagctacattcttatggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 gtagatagtccagtcacctataatggggaaggtgtgacattaagctacattcttatggtg 61

                                                       
Query: 241 acattggggagcatgaaatgactgatcatattgccaacacagac 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  acattggggagcatgaaatgactgatcatattgccaacacagac 17


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no330_b06.g1 MSMg01no330_b06.g1 CHROMAT_FILE:
MSMg01no330_b06.g1 PHD_FILE: MSMg01no330_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:15:44 2005
         (288 letters)



>mm_chr8_64086116_64086803
          Length = 688

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtctcccttgctctctggagttgagaacagccaggcatccgaagcaagcccggaagaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||
Sbjct: 201 tgtctcccttgctctctggagttgagaacagccaggcatccgaagcaagcgtggaagaat 260

                                                                       
Query: 61  ccttcctggcctctcagcttggatgtgtatggaaaaaagctccccgctctgcattcccta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 ccttcctggcctctcagcttggatgtgtatggaaaaaagctccccgctctacattcccta 320

                                                                       
Query: 121 tttaagaaagaagctgccccagccccatccaataaaacagagtagtgtttccttacgtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaagaaagaagctgccccagccccatccaataaaacagagtagtgtttccttacgtat 380

                                                                       
Query: 181 aaacaaccgagaaattcctcccaagcaagcacacagccttttgggtcttggaacaaagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacaaccgagaaattcctcccaagcaagcacacagccttttgggtcttggaacaaagtg 440

                                                           
Query: 241 gccggtggtatttattatgtcaaataaacacatcatccacactgcaaa 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccggtggtatttattatgtcaaataaacacatcatccacactgcaaa 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)