BAC Information

Click to search

BAC

Clone NameMSMg01-330M17
Chromosome8 (Build37)
Map Location 60,259,506 - 60,425,158
singlet/doubletdoublet
Overlap geneLOC100040711
Upstream geneLOC654355, LOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634
Downstream gene4930431L04Rik, BC030500
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330M17.T7 (MSMg01no330_m17.b1)MSMg01-330M17.TJ (MSMg01no330_m17.g1)
ACCAG447254AG447255
length757833
length of high quality
(start - end)
241 (125 - 365)284 (129 - 412)
definitionCHROMAT_FILE: MSMg01no330_m17.b1 PHD_FILE: MSMg01no330_m17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:35 2005CHROMAT_FILE: MSMg01no330_m17.g1 PHD_FILE: MSMg01no330_m17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,424,920 - 60,425,158)(60,259,506 - 60,259,789)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTCTGAAGCTTCTATGAATCTTTTTAAGTTTACAAAAAGATATGTTTCA
AATATGTTAGTATTACTACGGCCCGATAATAAGCTCTAAACTTTGGAGCC
TCAATACAACAGTAGCAAAGTGAGAGGAAGAAGTCTCAAGCATTTTTCCT
TCCTCCATTTTACTTTAAATCGCCCTCCTCTCAATTTCCCAGTTTCTTCA
TGTCTTCCAACCTTCATAACTTGCATTTACCAACCTCAAAACCTCTTTCT
AGACCCTCAAACACTGTCTTAGAAGCTTTTGTATCCTCAGACCTTACATA
AACTTCTAACTTTTTTTCCTTCCCCACCCCTCGACACGTTTTCCTACCTA
ATTCTTTACTGTGAGACACAGAATGTTGATATTCGGGAGCAGTCACTGTA
GTGCAGACACTTTGCAGTGAAGAACCATCAGCTTTTTTAAATGAAGAAAA
CCAAGCAGAATTAACCTAGTACGGTCAAAGGTGAATTATTATTATTATTA
TTATTATTATTATTTATTATTATTATTGCTCTTTGCAAACGGTAGACAGG
TTCTGTACCTTGGTTAGCCCTTGGGTTTGATTTTGTTTAGCTTTGAGATA
TCTCCCCTAAGAAGTCAAGCTGCCCTGGAAATCTTGTATCTCCAACTCTA
ATCCTCCTGAGGAACACTATTTCCTCACCCAGCCTCTCTCCTAAAAATTT
GTGAAAG
TTTTTTTNGTTTCCGTTNNTNNTTTTTCCTTTTCATATATCTNNNCTCCT
ATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTCACTTGCTCACTGCCTTT
GGAGGAGGTACTAAGTTCTAAGTTCACTTACTTGGAAATGTAGATAATGT
CCCCAAGTCCGGTATAGGAGGAGGAAATGTAGAATTGCTGGCTCAGTGTC
TCACATACAAGGAACTGTGTAATAGCTTCCCCTAATTTATTTTTAGTCAG
AAAGCATCCTCAGCTCTAAAAATCAGAATGTACTAGCCATCTGGTTTGAG
ACTTTTCTGAAATCCTGGCGAAATAAAGCTTTATAAAGTGTCCTGTGACT
CAATCCGTTACCCATATTTTTCTACCCCCCCTCCCACTTAAGCGAAAGGA
TTTAGGAGACAAAGGTAACCAAGGACTATCATGCTCGAAGGGAAACTACA
TCAAAGTTTTGGTTGATGTACAGCTGGAGAAATTATTATCCATTCAGGTT
TGGGGCTTTCCAGAGAAGAGAACAATCTGGTAGGTGGGCCTTTTGAATAC
ATTATTCACCATGCTGAATGAGTTCAACAGACATTTATGAAGTACCCTTT
ATATTTTGGTTATTGTCAGAGAAGAGGCATTTTATAGGAAGATAACCCAA
GTTGGTATCCTCTTAACCCATCAAATAGAAATAAATCAGCATGGTACTTT
ACCAAGGGTCTTGAGGTAAAAAAAATATCAGTTGAAAATTTAAATGCTAA
ATGAAATAAATAATTACCTAATTTAACACCATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_m17.b1 MSMg01no330_m17.b1 CHROMAT_FILE:
MSMg01no330_m17.b1 PHD_FILE: MSMg01no330_m17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:35 2005
         (241 letters)



>mm_chr8_60424820_60425460
          Length = 641

 Score =  400 bits (207), Expect = e-116
 Identities = 231/239 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   gataataagctctaaactttggagcctcaatacaacagtagcaaagtgagaggaagaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gataataagctctaaactttggagcctcaatacaacagtagcaaagtgagaggaagaagt 280

                                                                       
Query: 61  ctcaagcatttttccttcctccattttactttaaatcgccctcctctcaatttcccagtt 120
           |||||||||||||||||||||| |||||| ||||||| |||||||||||| |||||||||
Sbjct: 279 ctcaagcatttttccttcctccgttttaccttaaatcaccctcctctcaacttcccagtt 220

                                                                       
Query: 121 tcttcatgtcttccaaccttcataacttgcatttaccaacctcaaaacctctttctagac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 219 tcttcatgtcttccaaccttcataacttgcatttaccaacctcaaaacctcttcctagac 160

                                                                      
Query: 181 cctcaaacactgtcttagaagcttttgtatcctcagaccttacataaacttctaacttt 239
           || ||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct: 159 ccccaaacactgtcttagaaactgttgtatcctcagaccttacataaacttctaacttt 101


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no330_m17.g1 MSMg01no330_m17.g1 CHROMAT_FILE:
MSMg01no330_m17.g1 PHD_FILE: MSMg01no330_m17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:35 2005
         (284 letters)



>mm_chr8_60259306_60259989
          Length = 684

 Score =  534 bits (276), Expect = e-156
 Identities = 282/284 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtcacttgctcactgcctttggaggaggtactaagttctaagttcacttacttggaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtcacttgctcactgcctttggaggaggtactaagttctaagttcacttacttggaaa 260

                                                                       
Query: 61  tgtagataatgtccccaagtccggtataggaggaggaaatgtagaattgctggctcagtg 120
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct: 261 tgtagataatgtccccaagtccgggataggaggaggaaatgtagaattgctggctcaggg 320

                                                                       
Query: 121 tctcacatacaaggaactgtgtaatagcttcccctaatttatttttagtcagaaagcatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcacatacaaggaactgtgtaatagcttcccctaatttatttttagtcagaaagcatc 380

                                                                       
Query: 181 ctcagctctaaaaatcagaatgtactagccatctggtttgagacttttctgaaatcctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcagctctaaaaatcagaatgtactagccatctggtttgagacttttctgaaatcctgg 440

                                                       
Query: 241 cgaaataaagctttataaagtgtcctgtgactcaatccgttacc 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgaaataaagctttataaagtgtcctgtgactcaatccgttacc 484


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)