BAC Information

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BAC

Clone NameMSMg01-330O06
Chromosome8 (Build37)
Map Location 27,270,107 - 27,270,278
singlet/doubletsinglet
Overlap geneThap1
Upstream geneTacc1, LOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1, Bag4, Lsm1, Star, Ash2l, Kcnu1, Hgsnat, 4930444A02Rik, Fnta, Hook3, 1700047A11Rik, Rnf170
Downstream geneZfp703, Erlin2, Prosc, Gpr124, Brf2, Rab11fip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330O06.T7 (MSMg01no330_o06.b1)MSMg01-330O06.TJ (MSMg01no330_o06.g1)
ACCAG447327AG447328
length686807
length of high quality
(start - end)
170 (86 - 255)155 (188 - 342)
definitionCHROMAT_FILE: MSMg01no330_o06.b1 PHD_FILE: MSMg01no330_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:42 2005CHROMAT_FILE: MSMg01no330_o06.g1 PHD_FILE: MSMg01no330_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:42 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGGATCCGCGGAATTCCTGACTGTACGCACATGATAGCTAATAAATCAGA
TCCACTGGTAAATTATGCAAGTTATCCTTATCCCACCGATTACAGAAACA
AATTTCACAATGGTCTCTCAGATTTTGAGGGGTCAGTAATGTTCATGTTT
AATAATTGCAAGACAGTAAGACTTGTGTGCTGTTTTCTCTGGGGAATAGG
CTAGAATATAGCCTAAACTATGACTTGGCTTTTTGAAATTTCATACATCC
TCAGAATGTATGACTAGATGATGGAATGGTGACTGTTTCGTGCATTCGAC
TTGCCGCCTCCCTTTCCTATGCAATAANCTCCCGGGACAACCCCCCTTCA
AGTATGCAGACTAGTTTAAAATGGCTCTCCTCAAAAAAAAAAAAACAACT
GCTGGGTGTTGGAAAATAATAACAAGGGCTAACATGAGTCTCATGCCCTA
TGTATTAATAGTATCTGGCCAAGACCCTGCTTGACTTTTCCGTGCCCCCG
TTCTACGAGACGAGATTCTATTTATTTATTCTTAAGCTGTTTTTTTGGCG
CCCTGATCTTCTTTCCACTTATATGCTTTTTTCCAGCCTGAAAATTATTT
GCAGTGTATTAAGCTGGCTATTATTTTTCATATGCCCTATATTGAACTTT
GCCCTACGTCCTCATTTTATAAAATCATGTTTCCTG
TCCTTTTTTTCCCCTTTTTTCCCCTTTTTCTTCCTNGCCCTCCTTTTTTT
TNTCTTTTCTATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGTCCCGCGAAAATTCTCTTTTTAGCTCTGTAG
CCCAATCTTTCATTGGGATATTTGGTATTGCCCCGCGTCTAATTTTTGAG
CTCTTTATATATTTTAGATATTAGCCCTCTGTCAAATATGGGGTTGGAGA
AGATCTTTTCCTAATCTGCAGGCTGTAATTTTGTCATATTGACAGTGTTC
TTTGACTTATAGGAGCTTTCCAGTTATCATGAGGACCCATTAACTCAAAG
AAATCAGCTGTCTTCCTTTATACAAACAATAATTGGGCTGAAAAAGAATT
TAGAGAAACAATACCCCCCATTTTTTTTACACACACTATCCCAAATCTTG
GTGTAGCTCTAACCAAGCAAGTGAAAGACTTTTATGATAATAATTTCACG
TCTCTGAGGAAAGACATTGAGGAAGATATCATAAAATGGAAAGATCTTTC
CTGATCATGGAAGGTTTACCATATTGAAAATGTTCTACTTATCCCAATTC
GGTCATTTTCAGATCCTTTAAGGACGATTCTCATCTTCTCCTGTCGAATA
TTTCCCCTCACTATTTTATCCCCGTCTTTGAACCATTCATATGATCTTCC
TGGAAGGTAATCACCACTCCCTTTGACTCTTTGGTTTGCCCTTATCCGCA
TCTAAATATTCAATTTAACCTTTCTGCCTTTGGTTACGTGATTATCTTGC
TTACCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_o06.b1 MSMg01no330_o06.b1 CHROMAT_FILE:
MSMg01no330_o06.b1 PHD_FILE: MSMg01no330_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:42 2005
         (170 letters)



>mm_chr8_27269906_27270478
          Length = 573

 Score =  294 bits (152), Expect = 2e-84
 Identities = 166/172 (96%), Gaps = 3/172 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   cgattacagaaacaaatttcacaatggtctctcagattttgaggggtcagtaatgttcat 61
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 202 cgattacagaaacaaatttcacaatggtctctcagattttgaggggtcagtagtgttcat 261

                                                                       
Query: 62  gtttaataa---ttgcaagacagtaagacttgtgtgctgttttctctggggaataggcta 118
           |||||||||   |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gtttaataatgtttgcaagaaagtaagacttgtgtgctgttttctctggggaataggcta 321

                                                               
Query: 119 gaatatagcctaaactatgacttggctttttgaaatttcatacatcctcaga 170
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 322 gaatatagcctaaactatgacttggttttttgaaatttcatacatcctcaga 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 170
Length of database: 573
Length adjustment: 8
Effective length of query: 162
Effective length of database: 565
Effective search space:    91530
Effective search space used:    91530
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)