BAC Information

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BAC

Clone NameMSMg01-330P08
Chromosome8 (Build37)
Map Location 46,083,174 - 46,083,398
singlet/doubletsinglet
Overlap geneFat1
Upstream geneLOC100039508
Downstream geneLOC100039673, Mtnr1a, EG622523, F11, Klkb1, Cyp4v3, BC035537, Tlr3, Sorbs2, Pdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-330P08.T7 (MSMg01no330_p08.b1)MSMg01-330P08.TJ (MSMg01no330_p08.g1)
ACCAG447378AG447379
length732737
length of high quality
(start - end)
313 (47 - 359)227 (127 - 353)
definitionCHROMAT_FILE: MSMg01no330_p08.b1 PHD_FILE: MSMg01no330_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:47 2005CHROMAT_FILE: MSMg01no330_p08.g1 PHD_FILE: MSMg01no330_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:16:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAACACCTGAAAAAATG
TTCAACATCCTTAATCATCAGGCCCAATGCAAATCAAAACAACCCTAAGA
TTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAG
CAGATGCTGGTGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGT
GGGATTGCAAGCTTCTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTC
AGAAAATTGGACATAGTAATACCAGAGGATCCCGCAATACCTCTCCTGGG
CATATATCCATAAGTTGTCCCCCNTGCTAAGCCCGACACATGCTCCACTA
TGTTCATAGCAGCCTTATTTATAATAACAAGAAACTGGAAAGAACCCGGA
TGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAAT
GGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCA
AATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAA
AGGAACTCACACAATATATACTCACTGATAAGAGGATATTAGCCCAGAAA
CTTAGGATACCCAAGATATAAGATAAAATTTGCTAAACGCATGAAACTCA
AGAAGACAGAAGACCAAAGTGTGGACACTTTG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGCCATTGTGGCGTGAGTGGCCTT
TCAGTTCCTTCCTTTCTATAGCCANCAATGTTACACCGGAAACCCTCGGA
AGTTGTTTGCGGCTGTAACTACTTCCTATTGAACTGTGTTAGGTCTCCTT
TCCAGCCACAATAAAATGCCATTTTCTTATTGCCTCATTACTCAGTAATA
CAAGACTCACTTACTAAAGGAGCATGCAGCTAGAATGTGATTAGGTGCCC
AGTATATCTACTACCCACTGCAGTATTCTGCAGTGATTAAAGAACGCTCG
GNTTGTCGATTACTAANTGTCCCCCCCCCCCCCCACTAAATCTGTTTGTA
ATCTTCTACTGAACAGTCACACCATAAAATATATACCCGACGCGGATGGC
TCTTTATGAAATACTCTATTCTACATGTAAGCAAGGAAATCAGAGGCCCT
TGTATATTGGTGTTCTCCTAATAGACAACAAATGTATAATGTAGTCCTTT
TGAGTATGAACAACTCAGTCNCAGACAAGGGTACGAAAAAAAACTGGGGA
GGGAGGAACCTTCCAAGAACCAAGAGCCAACCAGGGGAAGTTGGCACTGC
CAGCTCTGGGTGTTTTGTAATAAGAAATACCAGCCAGTACCAAAGGCCGA
AAAAAATCAAAATTTAAGGGATTCTTTTTAATCCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no330_p08.g1 MSMg01no330_p08.g1 CHROMAT_FILE:
MSMg01no330_p08.g1 PHD_FILE: MSMg01no330_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:16:47 2005
         (227 letters)



>mm_chr8_46082974_46083600
          Length = 627

 Score =  427 bits (221), Expect = e-124
 Identities = 224/225 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgttacaccggaaaccctcggaagttgtttgcggctgtaactacttcctattgaactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 aatgttacaccggaaaccctcggaagttgtttgcggctgtaactacttcctattgaactg 366

                                                                       
Query: 61  tgttaggtctcctttccagccacaataaaatgccattttcttattgcctcattactcagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 tgttaggtctcctttccagccacaataaaatgccattttcttattgcctcattactcagt 306

                                                                       
Query: 121 aatacaagactcacttactaaaggagcatgcagctagaatgtgattaggtgcccagtata 180
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 305 aatacaagactcacttactaaaggagcatgcagctagaatgcgattaggtgcccagtata 246

                                                        
Query: 181 tctactacccactgcagtattctgcagtgattaaagaacgctcgg 225
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tctactacccactgcagtattctgcagtgattaaagaacgctcgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)