Query= MSMg01no331_d04.b1 MSMg01no331_d04.b1 CHROMAT_FILE:
MSMg01no331_d04.b1 PHD_FILE: MSMg01no331_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:04 2005
(526 letters)
>mm_chr8_60607333_60608260
Length = 928
Score = 978 bits (506), Expect = 0.0
Identities = 522/528 (98%), Gaps = 2/528 (0%)
Strand = Plus / Plus
Query: 1 actagaagttgattatggataatcaatgtgattaatatttttgtctgaaagtgcagttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actagaagttgattatggataatcaatgtgattaatatttttgtctgaaagtgcagttac 260
Query: 61 atccatgttaatgaaaggtaaatacaataattttgtctgactacaaaaatcaattttgct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atccatgttaatgaaaggtaaatacaataattttgtctgactacaaaaatcaattttgct 320
Query: 121 tcataaatctgaaaacactccaggaaatggatggttcaaactcttgcttattgcttttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcataaatctgaaaacactccaggaaatggatggttcaaactcttgcttattgcttttct 380
Query: 181 attcctgtctgaagcatctcatgatcacatagaaaagtatacattttagtcatagtattc 240
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 381 attcctgtctgaagcatctcatgatcacgtagaaaagtataaattttagtcatagtattc 440
Query: 241 ttcatatccttcatggtttcccaatatctaagctgttaactttttgtagtaattttatta 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 ttcatatccttcatggtttcccaatatctaaactgttaactttttgtagtaattttatta 500
Query: 301 gtctaagcaaattcttaagcctttctcattgtccaaacttatccctacataaaaaaa--t 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 gtctaagcaaattcttaagcctttctcattgtccaaacttatccctacataaaaaaaaat 560
Query: 359 aatcttaccatttagagttagtgatattaaagtaaggtgttctaaaattaatgacttagc 418
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 561 aatcttaccatttagagttagtgatattaaagtaaggtgttctgaaattaatgacttagc 620
Query: 419 aacaaaaagggatagtcagtacttaaaatttttatagattcattttattttatgtgtatg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacaaaaagggatagtcagtacttaaaatttttatagattcattttattttatgtgtatg 680
Query: 479 acgctctgcttgtgtgcacatatgtgtactgtgtgtgtgcattgagcc 526
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acgctctgcttgtgtgcacatatgtgtactgtgtgtgtgcattgagcc 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 928
Length adjustment: 10
Effective length of query: 516
Effective length of database: 918
Effective search space: 473688
Effective search space used: 473688
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no331_d04.g1 MSMg01no331_d04.g1 CHROMAT_FILE:
MSMg01no331_d04.g1 PHD_FILE: MSMg01no331_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:04 2005
(491 letters)
>mm_chr8_60784352_60785242
Length = 891
Score = 872 bits (451), Expect = 0.0
Identities = 481/491 (97%)
Strand = Plus / Minus
Query: 1 aattgggagcaaacttagcaacaaatagcaatcagactgaattgaccagtgcatgcaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 aattgggagcaaacttagcaacaaatagcaatcagactgaattgaccagtgcatgcaaaa 632
Query: 61 aggcagtggggtgtaaattctccagaaggttatacctgttttaggaagcacctatctgct 120
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 631 aggcagtggggtgtaaattccccagaaggttatacctgttttaggaagcacctatctgct 572
Query: 121 gtatgtgttcttccaagcaacttgttttctgagaatggtgttgaatttcataaaaccttg 180
|||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct: 571 gtatgtgttcttcctagcaaattcttttctgagaatggtgttgaatttcataaaaccttg 512
Query: 181 agtttaggaatttcagtttatctacttgtatagaacacattcacagacatttatgaaaat 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 agcttaggaatttcagtttatctacttgtatagaacacattcacagacatttatgaaaat 452
Query: 241 gaccatttgaaatgactccaagcaatgacatagtattatgagcctatactaagaattttt 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gaccagttgaaatgactccaagcaatgacatagtattatgagcctatactaagaattttt 392
Query: 301 tcagactagtataatgtgtgggatgaatccctgtgtttatgcaccacagccacaacaaaa 360
| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct: 391 taagactagtataatgtgtgggatgaatccctgtgtttatgcatcacagcaacaacaaaa 332
Query: 361 tcctgtgtaataggtttgttgtatcctataaaatataaactttacttgcaatattctata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tcctgtgtaataggtttgttgtatcctataaaatataaactttacttgcaatattctata 272
Query: 421 atgcttattagtgaacagacactgttaaaacagggctgggaagatagttcagtggataca 480
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 atgcttattaatgaacagacactgttaaaacagggctgggaagatagttcagtggataca 212
Query: 481 tggacttgttg 491
|||||||||||
Sbjct: 211 tggacttgttg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space: 423761
Effective search space used: 423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
