BAC Information

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BAC

Clone NameMSMg01-331K20
Chromosome8 (Build37)
Map Location 62,613,003 - 62,780,480
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC436042
Downstream geneAadat, Mfap3l, LOC100040679, 2700029M09Rik, Clcn3, B230317F23Rik, Nek1, Sh3rf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331K20.T7 (MSMg01no331_k20.b1)MSMg01-331K20.TJ (MSMg01no331_k20.g1)
ACCAG447912AG447913
length745744
length of high quality
(start - end)		701 (41 - 741)675 (70 - 744)
definitionCHROMAT_FILE: MSMg01no331_k20.b1 PHD_FILE: MSMg01no331_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:36 2005CHROMAT_FILE: MSMg01no331_k20.g1 PHD_FILE: MSMg01no331_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:37 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,613,003 - 62,613,699)(62,780,081 - 62,780,480)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTC
ATGAGCCGCTTACCTACTGTCTCTCTTTGGCTGTAAAGTAGCAATCTCAT
ATATTACTTCTAAATTACTACTATTTCTTTCCTGCCACAAATACAAGTTG
GACAGCTTTACCTGGTACAACGTAGAGATACTCAGGAATAACTCATGAAA
CCCTATGGAGAAATACTCTCTGCTTGGCTGTATTTATTTCTACCAGTATT
CATAAGATCTTCTCTTAATTAGAGACATTTAATGATTAACACTGGCCAAT
TTGCATCCAATTACAATCATTGAAAAATTGCAGGTAGATGAAAGGCTGAG
TGAAATTATTCATTCAGCAATGGGTGCTATAGGGAGTAACTGCAAAGAAG
AATCACTGGACAGCTCCAAAGGTAGTCAAAGGAAATGTTCTTGAATGGAT
CTACATTATAGACAGTATAATAGCTGGCCTTGCAAGTACAGAGAGATACT
TCATTATAGCTGTGATCTGTATCTACATAGTGTAACTGCTTGTTCATTGT
CCTTCATAAATATCATACTCAAGGGTTTTCATGTTTTTAAATTAGTACGT
GTCCCTATAATCTTGGTTTGTGAGAATATTTCATGTGTTTTAGATAGAAG
TCAGTAACAAGATTAATGTCTGCTACTTTGCCACTTGAACTTTAAATTCT
GTCCTTTGAAGCATGAACTTTTGAACCTTCAGAATGCTATTGGGN

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGCTTCTTTGGATTTAGAGGTAAAATATT
TGGATGAGTAACGAGAATAATAGTGAAACTAGAAAAAATGTTTATCGCAA
CATTCTTCTTTAAACTGTCTTCATAATTTATACAAGTTAATGAGCTATGG
AAAAATTTAATATTCTCGTAAAATTCGTATATATTTAGGACCTACTAACA
GAACATCTGTCATGCGTTATATATTGCTGCTTTTGTTGCTGTGACAGAAT
AGCCAACAGAAACAACTTAATGAAGGAAGGATTTCCTTTGGCTCATGTCT
CCAGAGTGTGTCATTGAGGGAAAGTCATGAGGACTGGAAATGGGCAGGGC
AAAATGTGAGGTGGTTGCTTCCCTTGTGTAAACAGTCAGGATGCAGGTAG
ATTGGGCTGGAACCAGGGACGAACTATAAGCATTAGACCCTTGCCCACAG
TGACCCACTTCCTCTAGCTATGTACAGCCACCTCTGAAACATTCTATAAC
CTCTCAAGATAGCACCTTCAGCCTGGGAGCAAGCTTTCAAACACATGCAT
TTGTGGGGGTAGTCAACACGCAAAGCGCAACACGTAAGATTCTGTGCCTT
CCTCTGAAGTGTTTAGGTAGATGGGGCTAATTGGTATGAAATAAAATAGT
AGATGAAGTTACTTTTATTGCTTCTATTTGCTCCTTTATTCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_k20.b1 MSMg01no331_k20.b1 CHROMAT_FILE:
MSMg01no331_k20.b1 PHD_FILE: MSMg01no331_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:36 2005
         (701 letters)



>mm_chr8_62612799_62613899
          Length = 1101

 Score = 1263 bits (653), Expect = 0.0
 Identities = 686/697 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgagccgcttacctactgtctctctttggctgtaaagtagcaatctcatatat 64
           |||||||||||||||  |  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatgagccgcagaaatactgtctctctttggctgtaaagtagcaatctcatatat 264

                                                                       
Query: 65  tacttctaaattactactatttctttcctgccacaaatacaagttggacagctttacctg 124
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 265 tacttctaaattactactatttctttcctgccacaaatacaagatggacagctttacctg 324

                                                                       
Query: 125 gtacaacgtagagatactcaggaataactcatgaaaccctatggagaaatactctctgct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtacaacgtagagatactcaggaataactcatgaaaccctatggagaaatactctctgct 384

                                                                       
Query: 185 tggctgtatttatttctaccagtattcataagatcttctcttaattagagacatttaatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tggctgtatttatttctaccagtattcataagatcttctcttaattagagacatttaatg 444

                                                                       
Query: 245 attaacactggccaatttgcatccaattacaatcattgaaaaattgcaggtagatgaaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 attaacactggccaatttgcatccaattacaatcattgaaaaattgcaggtagatgaaag 504

                                                                       
Query: 305 gctgagtgaaattattcattcagcaatgggtgctatagggagtaactgcaaagaagaatc 364
           |||||||||||||||||||||| ||||| ||| ||| |||||||||||||||||||||||
Sbjct: 505 gctgagtgaaattattcattcaacaatgagtgttattgggagtaactgcaaagaagaatc 564

                                                                       
Query: 365 actggacagctccaaaggtagtcaaaggaaatgttcttgaatggatctacattatagaca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 actggacagctccaaaggtagtcaaaggaaatgttcttgaatggatctacattatagaca 624

                                                                       
Query: 425 gtataatagctggccttgcaagtacagagagatacttcattatagctgtgatctgtatct 484
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 625 gtataatagctggccttgcaagtacagagagatatttcattatagctgtgatctgtatct 684

                                                                       
Query: 485 acatagtgtaactgcttgttcattgtccttcataaatatcatactcaagggttttcatgt 544
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 685 acatagtgtaactgcttgttcattatccttcataaatatcatactcaagggttttcatgt 744

                                                                       
Query: 545 ttttaaattagtacgtgtccctataatcttggtttgtgagaatatttcatgtgttttaga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttttaaattagtacgtgtccctataatcttggtttgtgagaatatttcatgtgttttaga 804

                                                                       
Query: 605 tagaagtcagtaacaagattaatgtctgctactttgccacttgaactttaaattctgtcc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tagaagtcagtaacaagattaatgtctgctactttgccacttgaactttaaattctgtcc 864

                                                
Query: 665 tttgaagcatgaacttttgaaccttcagaatgctatt 701
           |||||||||||||||||||||||||||||||||||||
Sbjct: 865 tttgaagcatgaacttttgaaccttcagaatgctatt 901


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 701
Length of database: 1101
Length adjustment: 10
Effective length of query: 691
Effective length of database: 1091
Effective search space:   753881
Effective search space used:   753881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no331_k20.g1 MSMg01no331_k20.g1 CHROMAT_FILE:
MSMg01no331_k20.g1 PHD_FILE: MSMg01no331_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:37 2005
         (675 letters)



>mm_chr8_62780081_62781155
          Length = 1075

 Score =  735 bits (380), Expect = 0.0
 Identities = 395/400 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgcttctttggatttagaggtaaaatatttggatgagtaacgagaataatagtgaaac 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tctgcttctttggattttgaggtaaaatatttggatgagtaacgagaataatagtgaaac 341

                                                                       
Query: 61  tagaaaaaatgtttatcgcaacattcttctttaaactgtcttcataatttatacaagtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tagaaaaaatgtttatcgcaacattcttctttaaactgtcttcataatttatacaagtta 281

                                                                       
Query: 121 atgagctatggaaaaatttaatattctcgtaaaattcgtatatatttaggacctactaac 180
           |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 280 atgagctacggaaaaatttaatattctcgtaaaattcggatatatttaggacctactaac 221

                                                                       
Query: 181 agaacatctgtcatgcgttatatattgctgcttttgttgctgtgacagaatagccaacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 agaacatctgtcatgcgttatatattgctgcttttgttgctgtgacagaatagccaacag 161

                                                                       
Query: 241 aaacaacttaatgaaggaaggatttcctttggctcatgtctccagagtgtgtcattgagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 aaacaacttaatgaaggaaggatttcctttggctcatgtctccagagtgtgtcattgagg 101

                                                                       
Query: 301 gaaagtcatgaggactggaaatgggcagggcaaaatgtgaggtggttgcttcccttgtgt 360
           ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 100 gaaagtcatgaggactggaaatgggcagggcgaaatgtgaggtggttgtttcccttgtgt 41

                                                   
Query: 361 aaacagtcaggatgcaggtagattgggctggaaccaggga 400
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  aaacagtcaggatgcaggtagattgggctggaaccaggga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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