BAC Information

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BAC

Clone NameMSMg01-331N12
Chromosome8 (Build37)
Map Location 111,530,436 - 111,530,788
singlet/doubletsinglet
Overlap genenone
Upstream geneAtbf1
Downstream gene4922502B01Rik, Gm1943, LOC100042829, Pmfbp1, Dhx38, Txnl4b, Hp, Dhodh, Pkd1l3, 2400003C14Rik, 4930566A11Rik, D8Ertd587e, LOC668089, LOC672735, Ap1g1, Phlppl, Marveld3, LOC100041884, Tat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-331N12.T7 (MSMg01no331_n12.b1)MSMg01-331N12.TJ (MSMg01no331_n12.g1)
ACCAG448037AG448038
length799769
length of high quality
(start - end)
123 (77 - 199)353 (79 - 431)
definitionCHROMAT_FILE: MSMg01no331_n12.b1 PHD_FILE: MSMg01no331_n12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:49 2005CHROMAT_FILE: MSMg01no331_n12.g1 PHD_FILE: MSMg01no331_n12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:17:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAATTTGCGNCCGCTAAACGAACTCCTANATGCTAAGGATCCGCGNAAT
TCANCTGATTTCCCTTCAAANACTGNATGGAGAATGACACACAACTCAAA
TGATTGGNNAGAGATACTTGGNNGNAACTTACTGCATCTAGCCATCAAAA
AATGGGAGTAACGAGACACAGTGGTTTTCACATANCAAGTACACATTCTG
GCANTGNTGNNNNGCCTGGNAAAGAANACCGNCAAGGCCCANTTCGAANG
ATGTAAGCAATCTGGTTACNNATTTATAATCAACANGTTTCAAGAAGCTT
TTTCAGAGGGCTGGGAGAGGTGTGTCNNCCNTTTTACANCCNCTGAACTG
CTCCTTCCCNANNTTCTCTGAGTTTCATTCTCGGGGGAAGCCCCCCTTNN
NNCTCTCTCCCTCCCCTTTTTTTTTTTGTTTTTCCCTCCCTCTTTCCCCT
TTCCTNNNNNNNNCCNCGCTTCTNTCAAAAATATCTCCCTCCTTTCCCCN
CCAATCCCCCCTTCTCCTTCTTCTTTTTTTTCCNACTATTTTCTTTATTA
TACCCCCCCCCCCCCATAATCCTTTCATCTTTTCCACCNCCCCTCNNTNT
TATATATTCTTATATTATAATAAAAAAGATAGTAGCTCAGCCTTAGATTT
TTCTTNTTTCCCCNNNNNTTTNNTTCCCCTTTTTCCCTTTTCTTTTTCTT
CCCCTCCCCTTCACCCTCTCTCTTTTTCTTTTTTCCTTTCCCCCCCTCCN
NNNCCCCCCCCCCTCACTAACTTGAGTTTCCTTTTGTGTGGAGGTGGTG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXGCTTAGCCACAGTGGAGTAGAG
GGAAATGTTTTTAGACAAGAAAAGAGCTTCATGTTTGACATGTGTAACAC
AGTAAGTGCATGTGGAATCTGAGGGACGCTGAGGTGCCAGGGTGGACGTT
AGGTTCAAGCTGTCACTAGTTCAAGTGGTGGTGCTGTCTTTCCACTGCAA
TGGTGCTACTAAGGGATACCTTTGAAGATATTTTAATTCCTAAACTACTT
CATGCTAATATATCCCAAAAGGAAGTGTTTGAGCGTAATGATTTGTCACT
TGTTTTGAGTAAAGGGAATTCCTCCTCTGAGTTTCAAAAGAAAAGTCTGG
GCTGCACTTGCCTCTCCGCACCGCTGTGCAGAGAAGTATTTTACAAGTCT
ATGCCTCATAGATGTCTGTGCCAAACCACCATCTAATACTGATGAGTTTA
TAGGGAGCACCTGCTATTACTAGACCATGAACTAGAACCTGGTATCGGAG
GAACGTGTTATAAGCAAGGTGTACGCCAGCAGGCCATATTTACTGTTACA
ATATTTGTTGCTACCGCAGCCTTATAAACCCTGGGTTGAGAAAGCAAGGC
CTTTGTTGTCCTTTTTTCTTTTGTTCGGACAAACTTTCTTCTTTTGTGTT
CCCTCTGAATAACACTGTTAGTCCCTCTGATTTTTGCCCTTACATAAAGT
TTTAAAGGTGGCGACCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no331_n12.g1 MSMg01no331_n12.g1 CHROMAT_FILE:
MSMg01no331_n12.g1 PHD_FILE: MSMg01no331_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:17:49 2005
         (353 letters)



>mm_chr8_111530236_111530988
          Length = 753

 Score =  636 bits (329), Expect = 0.0
 Identities = 347/353 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcttagccacagtggagtagagggaaatgtttttagacaagaaaagagcttcatgtttga 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcttagccacagtggagtagagagaaatgtttttagacaagaaaagagcttcatgtttga 260

                                                                       
Query: 61  catgtgtaacacagtaagtgcatgtggaatctgagggacgctgaggtgccagggtggacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgtgtaacacagtaagtgcatgtggaatctgagggacgctgaggtgccagggtggacg 320

                                                                       
Query: 121 ttaggttcaagctgtcactagttcaagtggtggtgctgtctttccactgcaatggtgcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaggttcaagctgtcactagttcaagtggtggtgctgtctttccactgcaatggtgcta 380

                                                                       
Query: 181 ctaagggatacctttgaagatattttaattcctaaactacttcatgctaatatatcccaa 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaagagatacctttgaagatattttaattcctaaactacttcatgctaatatatcccaa 440

                                                                       
Query: 241 aaggaagtgtttgagcgtaatgatttgtcacttgttttgagtaaagggaattcctcctct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaggaagtgtttgagcgtaatgatttgtcacttgttttgagtaaagggaattcctcctct 500

                                                                
Query: 301 gagtttcaaaagaaaagtctgggctgcacttgcctctccgcaccgctgtgcag 353
           | ||||||||||||||||||||||||||||||  |||||||||||||| ||||
Sbjct: 501 gcgtttcaaaagaaaagtctgggctgcacttgtttctccgcaccgctgcgcag 553


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 353
Length of database: 753
Length adjustment: 9
Effective length of query: 344
Effective length of database: 744
Effective search space:   255936
Effective search space used:   255936
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)