Query= MSMg01no332_d14.b1 MSMg01no332_d14.b1 CHROMAT_FILE:
MSMg01no332_d14.b1 PHD_FILE: MSMg01no332_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:27 2005
(473 letters)
>mm_chr8_81615294_81616167
Length = 874
Score = 781 bits (404), Expect = 0.0
Identities = 462/492 (93%), Gaps = 19/492 (3%)
Strand = Plus / Plus
Query: 1 ttgagaaganagnacttcttaaaacactccaggttttatatgcgctgaagctagtaccca 60
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ttgagaagacagcacttcttaaaacactccaggttttatatgcgctgaagctagtaccca 242
Query: 61 catggacaaggctcagggggcgcactgtgtgcgcagggcccaacttttctttgtgacccc 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 243 catggacaaggctcagggggcgcactgtgtgcgcagggaataacttttctttgtgacccc 302
Query: 121 tttgaagtgtggggcaacgtagaggggaaatg-g-atatatatatatatatatatatata 178
|||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||
Sbjct: 303 tttgaagtgtggggcaacatagaggggaaatgtgtatatatatatatatatatatatata 362
Query: 179 tatatatatatatat----------------attcctttctttctcttcttctttcttat 222
||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 363 tatatatatatatatgtatatatatatatatattcctttctttctcttcttctttcttat 422
Query: 223 tcttatt-ttttttagctgcaaaccagaaggagcctatgaatcttattttttttgtgaag 281
||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 423 tcttattgttttttagctgcaaaccagaaggagcctatgaatcttaattttaaagtgaag 482
Query: 282 gaggagcccaaggaagaggagtccctgagcatgcctttgcctcgctccagctacgtgttc 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gaggagcccaaggaagaggagtccctgagcatgcctttgcctcgctccagctacgtgttc 542
Query: 342 agcccggaaccggaagtgtcaaccccaagcgtctccgaggacccacttacaccccaggaa 401
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 543 agcccggaaccggaagtgtctaccccaagcgtctccgaggacccacttacaccccaggaa 602
Query: 402 ggcaaggggagtgtgttaaggcgggacatgtcggccaaggctgcctcagaacttctcatg 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 ggcaaggggagtgtgttaaggcgggacatgtcggccaaggctgcctcagaacttctcatg 662
Query: 462 aaactctcaggt 473
||||||||||||
Sbjct: 663 aaactctcaggt 674
Score = 80.0 bits (41), Expect = 3e-19
Identities = 41/41 (100%)
Strand = Plus / Minus
Query: 154 atatatatatatatatatatatatatatatatatatatata 194
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atatatatatatatatatatatatatatatatatatatata 337
Score = 78.1 bits (40), Expect = 1e-18
Identities = 40/40 (100%)
Strand = Plus / Minus
Query: 156 atatatatatatatatatatatatatatatatatatatat 195
||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 atatatatatatatatatatatatatatatatatatatat 338
Score = 74.2 bits (38), Expect = 2e-17
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 154 atatatatatatatatatatatatatatatatatatatatat 195
||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 383 atatacatatatatatatatatatatatatatatatatatat 342
Score = 74.2 bits (38), Expect = 2e-17
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 154 atatatatatatatatatatatatatatatatatatatatat 195
||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 385 atatatacatatatatatatatatatatatatatatatatat 344
Score = 74.2 bits (38), Expect = 2e-17
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 154 atatatatatatatatatatatatatatatatatatatatat 195
||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 387 atatatatacatatatatatatatatatatatatatatatat 346
Score = 74.2 bits (38), Expect = 2e-17
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 154 atatatatatatatatatatatatatatatatatatatatat 195
||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 389 atatatatatacatatatatatatatatatatatatatatat 348
Score = 74.2 bits (38), Expect = 2e-17
Identities = 41/42 (97%)
Strand = Plus / Minus
Query: 154 atatatatatatatatatatatatatatatatatatatatat 195
||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 391 atatatatatatacatatatatatatatatatatatatatat 350
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 124
Number of extensions: 32
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 10
Length of query: 473
Length of database: 874
Length adjustment: 10
Effective length of query: 463
Effective length of database: 864
Effective search space: 400032
Effective search space used: 400032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no332_d14.g1 MSMg01no332_d14.g1 CHROMAT_FILE:
MSMg01no332_d14.g1 PHD_FILE: MSMg01no332_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:27 2005
(621 letters)
>mm_chr8_81791299_81792319
Length = 1021
Score = 1139 bits (589), Expect = 0.0
Identities = 613/621 (98%)
Strand = Plus / Minus
Query: 1 aataggtgattcgcatttctgccaaaagtggagagggcatcactgagatgtgggacacaa 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 821 aataggtgattcgcatttctgccagaagtggagagggcatcactgagatgtgggacacaa 762
Query: 61 tgagagagtttcagcaccaaatgctggccagtggggagctggctgccaagagacagacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 tgagagagtttcagcaccaaatgctggccagtggggagctggctgccaagagacagacac 702
Query: 121 agcacaaagtctggatgtggaatctcattcaggaaaacgtcctagaacacttcaagaccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 agcacaaagtctggatgtggaatctcattcaggaaaacgtcctagaacacttcaagaccc 642
Query: 181 accccagcatccaagaacagatccccctgatggagagagaggtcctcagtggagccctct 240
|||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 641 accccagcatccgagaacagatccccctgatggagagaaaggtcctcagtggagccctct 582
Query: 241 ccccaggacgagcagcagacttgttgctaaaagcttttatttgcagacactaataaattt 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 581 ccccaggacgagcagcagacttgttgctaaaagcttttaaaagcagacactaataaattt 522
Query: 301 atcctgtgcgatcactttgtagagtttccctgagtgctgaatatccaaaatatcacctgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 atcctgtgcgatcactttgtagagtttccctgagtgctgaatatccaaaatatcacctgt 462
Query: 361 gtgtttatctgttacacctgtgtaatgccccagctgggaactgcttgtaaccttgaagct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gtgtttatctgttacacctgtgtaatgccccagctgggaactgcttgtaaccttgaagct 402
Query: 421 gtgggtggtgtggtcagacacacagcatctaggagaccctgctgtgtaggactggttcca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gtgggtggtgtggtcagacacacagcatctaggagaccctgctgtgtaggactggttcca 342
Query: 481 ctgtatcccttccttatgccctgacatgctagcctgctaagtagtttcttctcaagactc 540
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ctgtatcccttctttatgccctgacatgctagcctgctaagtagtttcttctcaagactc 282
Query: 541 aaaagtggaggaagctcgggaggagaaagaagaccttacattttgaaatggttacatcaa 600
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aaaagtggaggaagcttgggaggagaaagaagaccttacattttgaaatggttacatcaa 222
Query: 601 gtctctgttctctgaattgcc 621
|||||||||||||||||||||
Sbjct: 221 gtctctgttctctgaattgcc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
