BAC Information

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BAC

Clone NameMSMg01-332G04
Chromosome8 (Build37)
Map Location 76,515,422 - 76,516,040
singlet/doubletsinglet
Overlap genenone
Upstream geneLarge, LOC100039001, LOC666134, Crry-ps, LOC666146
Downstream geneIsx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332G04.T7 (MSMg01no332_g04.b1)MSMg01-332G04.TJ (MSMg01no332_g04.g1)
ACCAG448432AG448433
length1,3791,280
length of high quality
(start - end)
516 (218 - 733)620 (135 - 754)
definitionCHROMAT_FILE: MSMg01no332_g04.b1 PHD_FILE: MSMg01no332_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:46 2005CHROMAT_FILE: MSMg01no332_g04.g1 PHD_FILE: MSMg01no332_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:18:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGNNNTTACGGGGGNNNNTNNNNNNNNNNNNNNNNNNNNNNTAGGAGA
ANNNTANNNNNNNNNNNCAGNNNCNNNNNNNNNNNCCGACCCANNNNNNN
CCATGTGGCGCTAAGACCACANAGGGAGAGGACCGCGGAATTCTAAAATT
CCTAGGCACTCTCACACTAACCCGGAGGGNANNANNNNGAGTGAGGNAAN
ACCTTTACAAAAGACCTCAAATAATATGGACTCACTGATAAGTGGATATT
AGCCCAGAATCTTAGAATACCCAAGATACAAGATACAATTTGCAAAACAC
ATGAAACTCTAGAAGAACAAAGTCCAAAATGTGGACAATTTGCCCCTTCT
TGTAATTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAACGTTTG
GAGCTGAGACGAAAGGATGGACCATCTAGAGACTGCCATACCTGGGGATC
CATCCCATAATCAGCGTCTAAACGCTTACACCATTGCATACACTATTTTG
ATTTTGCTGAAAGGACCCAGATATAGCTGCCTCTTGTGAGGCTATGCCGG
GGCCTAGCAGACACAGAAGTGGATATTCACAGTCAGGTATTCGATGGATC
ACAGCGCCCCCAATGGAGGAGCTAGAGAAAATACCCATGGAGCAAAGGTG
TCTGAGGCCCTATGAGTGGAACAACAACATGAACTAATCAGTACCCCTCC
CCGCCCCCAGATCTCATGTCTCTAGCTGCATTGTATCAGAGGATGGCCTA
GTAGGCCATCGTTGGAAGGAGAGGCCCATTAGTCTTGCAAACCTTATATG
CCTCGGTACAGGGGAAGGCCAGGGCCAAGAAGTGGGAGGGGGTGGGGGGA
TGGTAGGGAGGNNNNTNNTTTTTTTTTTTTTTTTGNNGNNGGNNANNNNT
TNNNTTTNNNNGGGCNNNNNNTGGGNNNNNNGGGGNNNNNGGNNNNNNNN
NNNNTTTTTTGGTGTNNNGGNNNNNNNNNNNNNNNGTNGGTTGTTTNTTT
TTTNNTNTTTGAATNNNNTAATTTAAATTTTTNGATTNAGAATNTNTNNN
NTTANNAAGGTAANATNTAAGGTANTTTTTTTTATAAATNAGAAAAAAAG
GANAAANNTTATTTTGAAAATNATNAAATAATANAAANAAAATANTTTTA
TANNAATANNATAAATGAATNATNTNTNATTAGTAAATAANNAANAAAAT
TTTNTGATTTTATTTATGTNAAAAGATAATNAATCAAAANNAANTNGGAT
AATTNTAAATAAAANNNNATAAANTANATGTGGTTAAAAGGTANNTTNAA
AATTNNAAAAAATNNAATAAATNNNNAGANNNNTAAATTTANTTNNANNN
TGANNATTAAGAAATGTATATATAGTAAG
CCCGTTTTCTTNNNNAACGAGGTGAXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAAAGCCCACANTCCAG
NTACATTCATTCTCTAAATGCCTTTAAGAACCCCTGAGAATGGGTCTTGA
CATATTTGTAGGATTCACCTGAGAGACTATTTGAGTCTAATGTAAATTTT
AGCGCTCACTTTATTATTTACTTTATTTTAGTGACATGTTTTTTTGGGGA
ATTTCTGATTTTATTTGACTTTTAAAATTTACTTATAACACTTTTTTATT
AGTTTTATTTTAAATTATGAATCTCTTGTGTTACAATATTTTTGTGGGGG
TTTTCCCCATACTTTTTTTGGAAAGAGAGTCAAGTCAATTTTATCCAAGG
TTAATAATTATTTTTTGTTTAGAAAATGCAGCATTAGAAATTTTCCTTAT
TTAATATGTGTATTTAATATGTCTGAATAGCTATTTAAATTTTCTTTCTT
TCTATGTTATTCTACTTATTTTGGCTTTTTGGGAACAATCATCAGAAAAT
TCCTTAGCTTGATGTTTATTTCAATTACTTTCCTGTCTGTGCTGGAAGCA
TTAGAACACTGTGCTTCCTCTTCTGCTGGGCAACTTTCATTTTACGCTAC
AAGTGCAGACTTCTAGATAGAAATCTCAGGACAAACTTTTGCCTTTCTAT
CTGTCTTGTAGTTCTAAAGTTTCATTTCATGGGAAAACATAGGCCTTTTT
TAAGGCAGTGCTAACTGCTCAGCTATTGCACTGGCCTTACAAAGCTATGT
TGGCTCCTTTTCCCTCAAGAGAGCCCATCTCTGTGTGGCTTGCCTGATCT
TCATGTTGCATATGGACCCTCTGGGAATATTTGGCAACTTCCAGATCTAC
AGGGAACAGACCCTGCAATCTCTGAAATTCCCACTCATCTATTCTTTCTT
TTGCAGATCTCATCCGCCTTTAAATGTGATTTTTGCCCTTTACTAAAAAA
ATTCTGAAGTGGATGTTGGGAACTTGTCATCCGGTACTTTTACCACGAAT
TACTAAGCAAAGTCCACGTTAAACCTCCCTTTTTTTAAAATTATACTTAT
TTTGGGATCTCTCTTTTTAAACCCCAATTTCATTCCTGTCCCACTTAACC
TCCAATGGTTCCAATTCTTAATTCCTTTCTCCCCTCCTCCCTTTTTTTTT
TGTAAGATTTTTCTTCTACCCCACCTTACCTATATTTCCTGGTGCGCCCT
TTTTTTGGGTATATGTTTCTTCTTTTAACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_g04.g1 MSMg01no332_g04.g1 CHROMAT_FILE:
MSMg01no332_g04.g1 PHD_FILE: MSMg01no332_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:18:46 2005
         (620 letters)



>mm_chr8_76515038_76516057
          Length = 1020

 Score = 1108 bits (573), Expect = 0.0
 Identities = 608/625 (97%), Gaps = 11/625 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    tgagaatgggtcttgacatatttgtaggattcacctgagagactatttgagtctaatgta 60
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1003 tgagaatgggttttgacatatttgtaggattcacctgagagactatttgagtctaatgta 944

                                                                        
Query: 61   aattttagcgctcactttattatttactttattttagtgacatgtttttttggggaattt 120
            |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 943  aattttagtgctcactttattatttactttattttagtgacatgttttttgggggaattt 884

                                                                        
Query: 121  ctgattttatttgacttttaaaatttacttataacacttttttattagttttattttaaa 180
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 883  ctgattttatttgacttttaaaatttacttataacac-tttttattagttttattttaaa 825

                                                                        
Query: 181  ttatgaatctcttgtgttacaatatttttgtgggggttttccccatactttttttggaaa 240
            ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 824  ttatgaatctcttgtgttacaatatttttgtggggattttccccatacttttcttggaaa 765

                                                                        
Query: 241  gagagtcaagtcaattttatccaaggttaataatt-----attttttgtttagaaaatgc 295
            |||||||||||||||||||||||||||||||||||     |     ||||||||||||||
Sbjct: 764  gagagtcaagtcaattttatccaaggttaataattacacca-----tgtttagaaaatgc 710

                                                                        
Query: 296  agcattagaaattttccttatttaatatgtgtatttaatatgtctgaatagctatttaaa 355
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709  agcgttagaaattttccttatttaatatgtgtatttaatatgtctgaatagctatttaaa 650

                                                                        
Query: 356  ttttctttctttctatgttattctacttattttggctttttgggaacaatcatcagaaaa 415
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649  ttttctttctttctatgttattctacttattttggctttttgggaacaatcatcagaaaa 590

                                                                        
Query: 416  ttccttagcttgatgtttatttcaattactttcctgtctgtgctggaagcattagaacac 475
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589  ttccttagcttgatgtttatttcaattactttcctgtctgtgctggaagcattagaacac 530

                                                                        
Query: 476  tgtgcttcctcttctgctgggcaactttcattttacgctacaagtgcagacttctagata 535
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529  tgtgcttcctcttctgctgggcaactttcattttacgctacaagtgcagacttctagata 470

                                                                        
Query: 536  gaaatctcaggacaaacttttgcctttctatctgtcttgtagttctaaagtttcatttca 595
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469  gaaatctcaggacaaacttttgcctttctatctgtcttgtagttctaaagtttcatttca 410

                                     
Query: 596  tgggaaaacataggccttttttaag 620
            |||||||||||||||||||||||||
Sbjct: 409  tgggaaaacataggccttttttaag 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)