BAC Information

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BAC

Clone NameMSMg01-332K20
Chromosome8 (Build37)
Map Location 59,393,938 - 59,394,636
singlet/doubletsinglet
Overlap genenone
Upstream geneGlra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433
Downstream geneLOC654355, LOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332K20.T7 (MSMg01no332_k20.b1)MSMg01-332K20.TJ (MSMg01no332_k20.g1)
ACCAG448646AG448647
length1,3251,304
length of high quality
(start - end)
554 (210 - 763)699 (134 - 832)
definitionCHROMAT_FILE: MSMg01no332_k20.b1 PHD_FILE: MSMg01no332_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:22 2005CHROMAT_FILE: MSMg01no332_k20.g1 PHD_FILE: MSMg01no332_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGTTAAGGGGGGAAGNGNNNNNNNNTGGNNNNNNTGGGANNNNNNNNN
NNNNNNNAGGCCNNNNNNNNNNNCCCGCTCTGGGGNAACATGTGGGNTAA
GACTCCTNAGGGAGAGGACCGCGGAATTCATCTCATGGACGGGCCTTAAG
CTGACCTCCGGTANTGGNNGGGNTTCTCCCATAAACCTTTTGAGGNCCTT
ACACTAGNATATCTTGCAGACAGGATACCATTGTGGATCACAGGGTTGTG
GTTCTACTGCTGTCTTTCTTTCTTCTCTGGCTTCCTGCACAAAAGACCCC
TAGCATGTAAGGGTGACTGCTCTATCTAGGCACCAGCTCTACTTCTCTGT
GTTCTAACATAGTCTATTTTATTTCTCGTTCCTAGGGATATCTATCTTCG
ACCCCAGGCCTCAGTCCTTTAGCTTATATCTAACCTTTGTGGCTCCACAG
ACTATAACGTATTTATCATTAAATCAACATCTAAGATGTGCATAGAATCA
AACACATATTATATCTGTCTTTCAGTATCTGAGTTATCTACTCAAGATGT
TTTGTTTTGTTTTGATTTGGATTTTATACCATCCATTTTCTTGTGAATCC
CATGATTTCATTTGTTTTTAATGGGTGACTAACTCTCCACTGTGAAAATG
TGCCTCATTTTCCTTATCCACTCTTCTGTTCTGGGGCATTTAGGTTGTTT
CTAATTTCTGGCTATTATGAAGCTGGATCTTGAGGTAAATCAGTTCCCAT
CTTCCTAATGAACGGCCACACTGATTTCCAGCGTGGCGGTTAACGTCTGC
ACTTGATCACCATCATGAGCTGCTTGTTTTACTGATCTTGGCCATTCTGA
TGGGTGTAAAATGAAATCTCAAAGTGGTTTTGATTTGCGTTTTTTATGAG
AACTAAGGATATTGAACAATTCTTTAAGTGCTTCTTAGCAATTTGAGTTT
CTTTCATGAGGGGTCTGTTTAGAACCCTACCCTACTTTTTACTTGGGTGG
TTTTGGTGAAAACAGGGTTTTTGAGGTCCTGGGGAGTTTGAAAATAAACC
CCCACCAAAGGGGTAATCCGGGAAATTTTTTTTTTTTTCCTATGGAGGTG
CTTGTGTGAAAGAAAAGGACTTTTTTTTTAAAGGGGGGTTAATTTTTGAG
GGCCATTTGCCGTGGTGGATTTAAAAAAGAGAATGGGGGTGGTCGGAAAT
TTCCTGGTGCAAGGCTAAAAGCTTTCCCTTTTCTTTCTATATAAGAAATA
GCCAGGGAGCCGGACCCTGGGCGCATTTTTCNGAAAAAAAAAAATATATT
TTTTGAGCCGTAACCAATTGGGAGG
NCCGTCTCTTTTNNAAACCAAGTGAGNCGGCXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTATAAATCCGCATGGGACA
GAGCCTTTGACAGGTACAGCCCTTAAAGAGCACAGGTGAAAAGCACATTC
ATGTACTTGAGGTGAAGGACCACCATTAAAAATAAATAAGGAACTCCAAA
TGTGTAAATCCGATCTAAGCCAAACCATATGGCGTAAAATGAAAACATTT
CTTCCTGTACTTTTGGCAATATGGTTTCTTACCAGATTTTATATACCTGG
AAGTATCAACACAGCTGTTACCATGCAGTCTCTCCCCCCGATAGAAGGTA
TTGATGCTATAAGTAGTCCGGTGATATTCTCACTGTGTAGCTATGTGTGC
ACAAAGAATGTCATGTTTGCAGTAGAAGTGTTAAAATCCTGGGCAACACC
TCATACGTTATTGGCCTTCCATAGTGAACAAAGTCATTTTTCAAGCAAGT
CATAAAGTAGTCTAAAAAACAAGTGTTTCAGTGTTTGCTCCAAATGAGGC
AGTGGTGGGGGACTGCCGTTCATCTGACATCATTTCTGATGTAGTCAGCA
CCAGCTTGGTATCTGATTAGGGCCCCCGCCATGGTGGTGCCAGACTTACA
ACTTTAAGTGGGGTGGCTGAAGGAAATTAATGTGTCAGAGTTCCCTGAAG
GTGAGCGTGTCTGCTTCACGTTTCCTTCAGAGAGCTTCAACTGGAGTTGC
CTTTGATTCTTTCTAAGAGAATCTTTTGAAGATATTTCTGCATCTGGGTA
ATAGGGAGAGATGAGCTATCAACAGCAAACACATCTAGCAAAAAACATGT
TGCCACATCGTCCCTGAAAGATGCAGATATCTTTGGTGAGAATGTGGTAA
GATCAGTGGCTCCATTCAAGGCTGCTGAAAATCCGCAAGGATAAACAACC
ATCTTGACTATAGCTTTAACCTGGCTCATGTGACTTGAATCCCCCTTCAC
TTATATTTCCTTTAAATATACGAAAAGTGTTCTGGTGGTGGGTGCCAGTG
GCAAGTTCCCACCTTTTAATCCCAATGCCTTGAAAAAAAAAAACACGGCC
AAAACTTGAGGTTGTGGGGCCACCCCAAAATATAAAAGCATGTTCCTCAG
AAATGGGGGGGCTTTCACAAGGGGAATCCCGGCTCTTGTAAAAAACCCTA
CCCACCCCTACTCACCTTCGAAACATAAATTCAAATCCCCGAGATTTGTT
TCGCTTCCCCGAGATTCACAAATTGTTATAAATACTCCTCTTATCTTGTC
TTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_k20.g1 MSMg01no332_k20.g1 CHROMAT_FILE:
MSMg01no332_k20.g1 PHD_FILE: MSMg01no332_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:23 2005
         (699 letters)



>mm_chr8_59393738_59394836
          Length = 1099

 Score = 1336 bits (691), Expect = 0.0
 Identities = 697/699 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtgaaaagcacattcatgtacttgaggtgaaggaccaccattaaaaataaataaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 899 aggtgaaaagcacattcatgtacttgaggtgaaggaccaccattaaaaataaataaggaa 840

                                                                       
Query: 61  ctccaaatgtgtaaatccgatctaagccaaaccatatggcgtaaaatgaaaacatttctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 ctccaaatgtgtaaatccgatctaagccaaaccatatggcgtaaaatgaaaacatttctt 780

                                                                       
Query: 121 cctgtacttttggcaatatggtttcttaccagattttatatacctggaagtatcaacaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 cctgtacttttggcaatatggtttcttaccagattttatatacctggaagtatcaacaca 720

                                                                       
Query: 181 gctgttaccatgcagtctctccccccgatagaaggtattgatgctataagtagtccggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 gctgttaccatgcagtctctccccccgatagaaggtattgatgctataagtagtccggtg 660

                                                                       
Query: 241 atattctcactgtgtagctatgtgtgcacaaagaatgtcatgtttgcagtagaagtgtta 300
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 659 atattctcactgtgtagctatgtgtgcacaaagaatgtcatgcatgcagtagaagtgtta 600

                                                                       
Query: 301 aaatcctgggcaacacctcatacgttattggccttccatagtgaacaaagtcatttttca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 aaatcctgggcaacacctcatacgttattggccttccatagtgaacaaagtcatttttca 540

                                                                       
Query: 361 agcaagtcataaagtagtctaaaaaacaagtgtttcagtgtttgctccaaatgaggcagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 agcaagtcataaagtagtctaaaaaacaagtgtttcagtgtttgctccaaatgaggcagt 480

                                                                       
Query: 421 ggtgggggactgccgttcatctgacatcatttctgatgtagtcagcaccagcttggtatc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ggtgggggactgccgttcatctgacatcatttctgatgtagtcagcaccagcttggtatc 420

                                                                       
Query: 481 tgattagggcccccgccatggtggtgccagacttacaactttaagtggggtggctgaagg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tgattagggcccccgccatggtggtgccagacttacaactttaagtggggtggctgaagg 360

                                                                       
Query: 541 aaattaatgtgtcagagttccctgaaggtgagcgtgtctgcttcacgtttccttcagaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 aaattaatgtgtcagagttccctgaaggtgagcgtgtctgcttcacgtttccttcagaga 300

                                                                       
Query: 601 gcttcaactggagttgcctttgattctttctaagagaatcttttgaagatatttctgcat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 gcttcaactggagttgcctttgattctttctaagagaatcttttgaagatatttctgcat 240

                                                  
Query: 661 ctgggtaatagggagagatgagctatcaacagcaaacac 699
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 ctgggtaatagggagagatgagctatcaacagcaaacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space:   750321
Effective search space used:   750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)