BAC Information

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BAC

Clone NameMSMg01-332L21
Chromosome8 (Build37)
Map Location 100,756,979 - 100,757,624
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC546090, LOC636859, EG384885, LOC100041173, EG636915
Downstream geneCdh8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-332L21.T7 (MSMg01no332_l21.b1)MSMg01-332L21.TJ (MSMg01no332_l21.g1)
ACCAG448691AG448692
length1,2911,262
length of high quality
(start - end)
656 (144 - 799)634 (128 - 761)
definitionCHROMAT_FILE: MSMg01no332_l21.b1 PHD_FILE: MSMg01no332_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:31 2005CHROMAT_FILE: MSMg01no332_l21.g1 PHD_FILE: MSMg01no332_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:19:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCGCCCACTTTNNNNNNCCAATGGGCGCTAAGACTCCTAAGGGAGAGG
ATCCGCGGAATTCAGAGATAGACGAGACTCAATCACACCCCGACTTATTN
ANNNTCAATATNAAAGNACCTTATAAAACCCCATGTTTGGANAGATATAC
AACAATTCACTCTCTACTCTTACTTTCATTATAGAGAGTGTTCAATCAAA
CATAGCAATTGTTCAAAACAAAATATAAAACTGCAAAAGTGACCCATGCC
AAAAAATAATCTAACATTTTCCTCACCATCATAGACAGATTAAAAACATC
AACAACAACAACAACAACAACAACATACTTCCAGATTTAATGTTCAATTT
AGCCACTCATTCCCTTCTCTCACAATATTTATCCCAACACTGTGAAAAAT
CATGCCTTTTGTATTTATTCTATTAGCAGAACTTTAATACTATTTTCAAA
TGAAAATTATTATGAAATAACTCGGTTCTGACCTCAAAGCTGATGGCCTC
ACCTGTTTATTATTTCTTTTTTAAAAATTTTTTATTAGATATATTCTTTA
TATACATTTCAAATGCTATCCCGAAAGTTCCCTATACCCTCCCTCTGCCC
TGCTCCCCTATCCACCTTCTAGTACCCTTCTTGGCCCTGGCGTTCCCCTG
TACTAGGGCATACAAAGTTTGCAATACCAAGGGCCTCTCTTCCCAATGAT
GGCTGACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACAGGAGCTCT
GGGGGGATAGGTTAGTTCATATTATTGTTCCACCTATAGGGTTACAGAGC
CCTAGGCCACTGAGTCTATGTTACCTCATTTGTCGAATACTATAAATTCT
TAGCACTGAATCTTAACTTTCCGACTTGGGNTTTAAATTTCCCAGAGAGG
TTTGCTAAGTTGAAGGTCTATAATCTACCTCCTACTTTTTACTTTAAACA
TTCCGGAGCTAAAGAAAGAACCCAGGAGCTAAAGGGAAACACAATGGGGA
AGTTGGTGTGGCTGCCCCCGGCAAGGAATAAAAGGCTTAANAAAACCCTT
TTAATGTAATGGGAAAAAATCTATGAAAAGGGGAAAAAAAAATTCAAAGA
CTTGGAGGGGGCTTTTCCCTTTTCTCCCCAAAGGGGCCAAAGGGACGGGG
TTGAAAACTTAAAGCTTGATCGGGAAAAACTTGGGGGAAAAGGGAACCCC
AACCCGGGAGGGGTCGGGGGATGGCTATATCTCCTTTACAATGGGAGGCG
GGGGGAAAAAAATCTCTGTGTTTGGAACGAGGGCGTTCATA
NCCGTCCTTNNNNNNACGCATGGAGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCTCAAACCCCATTGNAGGGCAGAA
GAGCATCCAGCCTGCTTTGAATACTGCTCATTCTTTCACCCAGGTCTATG
TGAGAAGGCATCACAGGAGGAACAAAAACAGAACAGTGGTTCATTTGGAG
GGAAAGAAAAGAATTTCAAGCTCCAGGCAAGGCTGACACTGAGAAATCAA
TTGTACTTGTTAAAGATATTTGCTCCATTACAGAGAAATCTCTTTGATAG
ATAAAGCACTCTATCTAGTGAAAATCCAAATCCATATGAATTGAGAGAGC
CTAAATTGAAACACTATTCTGCTTGAAAAAAAACACCTAAGAAAATGTTT
TCCAAGGTTTAGCTGGGAAGAGATACAGGAGCCAGTGTAACCAAAGTCTA
AGAGACCAGGCTACATCTCAAGTTACAGGTTGAACTTGGGATCACTGTTC
ACATAGTATGAGTTTCATAGGTATGATAGACCTGAGCAAGGCAAGTTCAC
ACAATGCACGTGCTAAGGTTGTAGGCAGCCACTGAGGATGGACAATTTAT
ATATCAGACTCAGTTCCCTGAAAATAGTCCCAGAGTGACCACAGCATAAA
AATGTGAAAGTGAAGCCTCTGCTATAAGGGAGATAGATCCCAGAGTACTG
GGTATGCCAAGACAATGAGATACACATCTAGGAAAGCTACATGCATGGAT
TCCTGACCTAAGAGAGAAGAGAGACTGTGTTTTCTGCAGGATGATAGTTT
GAGAGGTGAGACTAAGTAAGCCTTTTGTAGGACAGAAGATTTCATCACAA
GTGGCAGATGCCTGTGTGGACAATCAGGGTTTGATGTTTGTTCTTCTGGG
TTGNCATTCCTTTCTTTCTTTTTTTTTTCTTTTCCATTTTTTATTAGGTA
TTTAGCTCATTTACATTTTCAATGCTATACCAAAAGCCCCCCCAAACCAC
CCACCCCCATTCCCTATACCAACCATCCCCCTTTTTTGGCCTGCCATTCC
CCGTGACGGGGCAAAATAAATTTGGGGGCTTAAAGGGCCTCTTTTTCCGG
GATGGCTCAAAAAGCCATCCTTTTAATACCTTGCGCTTTCAACACAAAAC
CCCGCGGAAAGGGAAAACAACAAGTGTGCCCCCTCTATGGGTGGCGAAAC
CCCTTATCTCTCTGGGGGATTTCTCTACCTCTCCTTCTGTAGAGCGGGTA
GCCTCTCATATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no332_l21.b1 MSMg01no332_l21.b1 CHROMAT_FILE:
MSMg01no332_l21.b1 PHD_FILE: MSMg01no332_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:19:31 2005
         (656 letters)



>mm_chr8_100756870_100757924
          Length = 1055

 Score = 1152 bits (596), Expect = 0.0
 Identities = 637/656 (97%), Gaps = 10/656 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatatacaacaattcactctctactcttactttcattatagagagtgttcaatcaaacat 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 755 gatatacaacaattcactctctaatcttactttcattatagagagtgttcaatcaaacat 696

                                                                       
Query: 61  agcaattgttcaaaacaaaatataaaactgcaaaagtgacccatgccaaaaaataatcta 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 695 agcaattgttcaaaacaaaatataaaactgcaaaagtgacccatgccaaaaaataatcaa 636

                                                                       
Query: 121 acattttcctcaccatcatagacagattaaaaacatcaacaacaacaacaacaacaacaa 180
           |||||||||||||||||||||||||||||||         ||||||||||||||||||||
Sbjct: 635 acattttcctcaccatcatagacagattaaa---------aacaacaacaacaacaacaa 585

                                                                       
Query: 181 catacttccagatttaatgttcaatttagccactcattcccttctctcacaatatttatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 584 catacttccagatttaatgttcaatttagccactcattcccttctctcacaatatttatt 525

                                                                       
Query: 241 ccaacactgtgaaaaatcatgccttttgtatttattctattagcagaactttaatactat 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 524 ccaacactgtgaaaaatcatgccttttgtgtttattctattagcagaactttaatactat 465

                                                                       
Query: 301 tttcaaatgaaaattattatgaaataactcggttctgacctcaaagctgatggcctcacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 tttcaaatgaaaattattatgaaataactcggttctgacctcaaagctgatggcctcacc 405

                                                                       
Query: 361 tgtttattatttcttttttaaaaattttttattagatatattctttatatacatttcaaa 420
           ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 404 tgtttattatttc-tttttaaaatttttttattagatatattctttatatacatttcaaa 346

                                                                       
Query: 421 tgctatcccgaaagttccctataccctccctctgccctgctcccctatccaccttctagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tgctatcccgaaagttccctataccctccctctgccctgctcccctatccaccttctagt 286

                                                                       
Query: 481 acccttcttggccctggcgttcccctgtactagggcatacaaagtttgcaataccaaggg 540
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 acccttcttggccctggcattcccctgtactagggcatacaaagtttgcaataccaaggg 226

                                                                       
Query: 541 cctctcttcccaatgatggctgactaggccatcttctgctacatatgcagctagagacag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 cctctcttcccaatgatggctgactaggccatcttctgctacatatgcagctagagacag 166

                                                                   
Query: 601 gagctctggggggataggttagttcatattattgttccacctatagggttacagag 656
           |||||||||||||||||||||||||||||| |||||||| |||||||||| |||||
Sbjct: 165 gagctctggggggataggttagttcatattgttgttccatctatagggttgcagag 110


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1055
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1045
Effective search space:   675070
Effective search space used:   675070
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)