BAC Information

Click to search

BAC

Clone NameMSMg01-333F08
Chromosome8 (Build37)
Map Location 24,966,457 - 24,966,954
singlet/doubletsinglet
Overlap geneZmat4
Upstream geneMyst3, LOC100042253, Ank1, Nkx6-3, Agpat6, Gins4, Golga7, Sfrp1, LOC100040931
Downstream gene1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5, Adam32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-333F08.T7 (MSMg01no333_f08.b1)MSMg01-333F08.TJ (MSMg01no333_f08.g1)
ACCAG449117AG449118
length713759
length of high quality
(start - end)		557 (51 - 607)111 (67 - 177)
definitionCHROMAT_FILE: MSMg01no333_f08.b1 PHD_FILE: MSMg01no333_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:29 2005CHROMAT_FILE: MSMg01no333_f08.g1 PHD_FILE: MSMg01no333_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:20:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCACAAGTTCCCGACCGGCGCGGAATTCCCAATACATTCCCGCACTGC
TGTTCCTATACCCCACTACATGCACAATACAACAGACCCAGCCATAATAC
AATTTCTACCAAGAAGACAAGGGTCACTGTTTTATCCAAACCTGCCTGAT
ATAGCAGCTGGTGCTGAGATCTCGAGATCTTGATCTCTCTTCCCTCCCTT
CTCCCCTTACCCTCTCCTTCTTCTTCTCATTCTCCCTCCCTCTCTCCCTT
CCTTCTCTTCCCTCCTTCTCTCTCCCCCTCTCTTGCTCTCTCAATCTCTG
TCTCTCTCCCATTTTCCTGAAGCCTACAGCTTATCAGAAAATGGTGGATA
CCTGAACAAACTTTGGGCTATGTGAAAAGGATAGTTTTCCATACACCGCA
AATGTTTTCCATAGATTGGCACGATCCCATTTTATCGTANAAAAAATAAT
GCACAAGTCACCAGGGTGAGCAATTCTGACTCCCTATTAAAATACCTATG
CATACATATGTATAAAAGCAAACACTTTGTGCTTCAGAAATAAAACTATT
CCATGAGTTATCGCTATGAACTTGAGTACAGCATTTTATCTCTCTCAAGT
TAAGAGGTTAAGACGAGAATCCCTTCAAGGTCTGTGATACAAAATCATTA
CTAATTCAAAAGCTTGAATAAAAGAACACTGGGTATTTTGATAATATTTC
TTTGAGACTGGGG

TACAATGGGANNCCTGGCGNCCGCCTGTTTTCAAAATATAGGTGACCTAT
ANAANGATCCCCGAAATTCATGCTCTAATGGAAAGGACCATTAAAGCACA
GGTTTGGGATCATAAAAGGAGGTGTTGACTATTTTTCTGCAACAACTTTG
GNACAGATACCTCAAAACATTTCNAAAANAAATAANTGGNTAAATTATGC
AAAAGCCTTGTAGTTAGCATTCATAATTAAAACCAAAATATTGTTANCCA
CCTAAAATATTAACCAAAATGAAAAATGTCCTATCTCATGTTGNTGNNAG
TGTTGTAGAGAAAAAANACTTTACATTNNTTCCTTGGNNNNNAAATAATT
TGAACACATGAGACAGGTCTCAAAAATGCCCCTAGAAACCCNTTATACAG
GCCTTTCTCCTGGGACCCCCCCCCCCAANNAAAATAACCNAAAATGCCCA
CAAGGGGTCCAAAGCAGGGNAATTCTCTTTCCCCNNTTTATTCCTTAATA
CCCAAAATTTGGGGCGATGGGGGGGGGTGGCGGGCTGGGGNNNCCCCCTT
TNNNNNTTGNNACTCCCNNCAAACCTAGTCNNNTNNTTTGAATGGGTGAA
ACCCCTGNNNNCNNCNNNCNNNCNNCNCNNNNNNNNTTTTTTTTTTACCN
TAAAAAAATTNNCAAACTCAAAAGGAGGCCGGAAACGGCGGCGGGTAAAN
NNNCCTTNNNNNAAAAANACCAAAACTTCTTGAAATTGGGGTCCTTCTTG
TTGTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no333_f08.b1 MSMg01no333_f08.b1 CHROMAT_FILE:
MSMg01no333_f08.b1 PHD_FILE: MSMg01no333_f08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:20:29 2005
         (557 letters)



>mm_chr8_24965997_24966954
          Length = 958

 Score =  911 bits (471), Expect = 0.0
 Identities = 491/498 (98%), Gaps = 1/498 (0%)
 Strand = Plus / Minus

                                                                       
Query: 61  aagaagacaagggtcactgttttatccaaacctgcctgatatagcagctggtgctgagat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 aagaagacaagggtcactgttttatccaaacctgcctgatatagcagctggtgctgagat 899

                                                                       
Query: 121 ctcgagatcttgatctctcttccctcccttctccccttaccctctccttcttcttctcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 ctcgagatcttgatctctcttccctcccttctccccttaccctctccttcttcttctcat 839

                                                                       
Query: 181 tctccctccctctctcccttccttctcttccctccttctctctccccctctcttgctctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 tctccctccctctctcccttccttctcttccctccttctctctccccctctcttgctctc 779

                                                                       
Query: 241 tcaatctctgtctctctcccattttcctgaagcctacagcttatcagaaaatggtggata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 tcaatctctgtctctctcccattttcctgaagcctacagcttatcagaaaatggtggata 719

                                                                       
Query: 301 cctgaacaaactttgggctatgtgaaaaggatagttttccatacaccgcaaatgttttcc 360
           ||||||||||||||||||||||||||||||||||||||||||| |  | |||||||||||
Sbjct: 718 cctgaacaaactttgggctatgtgaaaaggatagttttccatagattggaaatgttttcc 659

                                                                       
Query: 361 atagattggcacgatcccattttatcgt-anaaaaaataatgcacaagtcaccagggtga 419
           |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 658 atagattggcacgatcccattttatcgtaaaaaaaaataatgcacaagtcaccagggtga 599

                                                                       
Query: 420 gcaattctgactccctattaaaatacctatgcatacatatgtataaaagcaaacactttg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gcaattctgactccctattaaaatacctatgcatacatatgtataaaagcaaacactttg 539

                                                                       
Query: 480 tgcttcagaaataaaactattccatgagttatcgctatgaacttgagtacagcattttat 539
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 538 tgcttcagaaataaaactattccatgaattatcgctatgaacttgagtacagcattttat 479

                             
Query: 540 ctctctcaagttaagagg 557
           ||||||||||||||||||
Sbjct: 478 ctctctcaagttaagagg 461


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 958
Length adjustment: 10
Effective length of query: 547
Effective length of database: 948
Effective search space:   518556
Effective search space used:   518556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |