This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
Click to search
Search Parameter
BAC name
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search by nearby gene name.
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Search Result
BAC
Clone Name
MSMg01-333K07
Chromosome
8 (Build37)
Map Location
66,129,270 - 66,129,922
singlet/doublet
singlet
Overlap gene
none
Upstream gene
Spock3
Downstream gene
LOC384831
,
EG244495
,
Tll1
,
LOC100040989
,
Cpe
Link
Open Mouse BAC browser
Click to get alignment info.
name
Spock3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:72902
MGI:1920152
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC384831
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:384831
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 15 Proteins
pseudo
: _no_value
name
EG244495
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:244495
MGI:3644562
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins
name
Tll1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:21892
MGI:106923
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
LOC100040989
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:100040989
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST
name
Cpe
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:12876
MGI:101932
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Spock3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:31982622
GeneID:72902
MGI:1920152
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3
transcript_id
: NM_023689.2
name
EG244495
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94383597
GeneID:244495
MGI:3644562
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs, 4 Proteins
product
: predicted gene, EG244495
transcript_id
: XM_146372.5
name
Tll1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:117414179
GeneID:21892
MGI:106923
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: tolloid-like
transcript_id
: NM_009390.2
name
LOC100040989
(CDS detail)
type
mRNA
link
vega
ensembl
NCBI
xref
GI:149258782
GeneID:100040989
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST
product
: hypothetical protein LOC100040989
transcript_id
: XM_001475474.1
name
Cpe
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118129924
GeneID:12876
MGI:101932
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: carboxypeptidase E
transcript_id
: NM_013494.3
name
Spock3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:12963787
CCDS:CCDS22326.1
GeneID:72902
MGI:1920152
definition
GO_component
: GO:0005578 - extracellular matrix (sensu Metazoa) [Evidence IEA]
GO_function
: GO:0005509 - calcium ion binding [Evidence IEA]; GO:0004857 - enzyme inhibitor activity [Evidence IEA]; GO:0008191 - metalloendopeptidase inhibitor activity [Evidence IEA]
codon_start
: 1
note
: testican 3
product
: sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3
protein_id
: NP_076178.1
name
EG244495
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:51764128
GeneID:244495
MGI:3644562
definition
codon_start
: 1
product
: similar to Shugoshin-like 2 (S. pombe)
protein_id
: XP_146372.3
name
Tll1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:117414180
GeneID:21892
MGI:106923
definition
GO_function
: GO:0008533 - astacin activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
codon_start
: 1
product
: tolloid-like
protein_id
: NP_033416.2
name
LOC100040989
(CDS detail)
type
CDS
link
vega
ensembl
NCBI
xref
GI:149258783
GeneID:100040989
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_001475524.1
name
Cpe
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:22203763
CCDS:CCDS22327.1
GeneID:12876
MGI:101932
definition
GO_function
: GO:0004182 - carboxypeptidase A activity [Evidence IEA]; GO:0004180 - carboxypeptidase activity [Evidence IEA]; GO:0004183 - carboxypeptidase E activity [Evidence IMP]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0030070 - insulin processing [Evidence IMP]; GO:0006508 - proteolysis [Evidence IEA]
codon_start
: 1
note
: carboxypeptidase H
product
: carboxypeptidase E
protein_id
: NP_038522.2
name
LOC384831
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:384831
definition
number
: 1
pseudo
: _no_value
clone name
MSMg01-303K19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-490N11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-061K17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-399B23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-396A11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-548A13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-331A17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-116K04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-417B17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-106B11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-297A02
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-078H19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-489F03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-108H11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-448O03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-449F14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-537O16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-114L18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-516L05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-114N19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-513P21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-343P02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-436D05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-280J05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-074A10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-074B09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-475D02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-268J05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-440G16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-543D02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-167L17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-068O16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-540F02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-379A17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-420N12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-374A10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-102I12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-072J02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-325I02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-155J18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-149H20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-147J20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-362B21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-492M22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-094D12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-108P20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-385N02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-079A16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-076I20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-192N06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-437D07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-065B12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-068I02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-311A20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-269P09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-194P07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-236L20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-339K10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-453O12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-045K20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-333K07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-389P04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-503L17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-420O09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-392E09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-162B18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-162C17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-343H21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-103G24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-534J12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-236B21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-061I03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-488K07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-076O10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-290N21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-199C15
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-462A17
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-420O13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-400L01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-082B02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-081K23
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-453G06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-176F01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-103O24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-312H06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-108O16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-384O08
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-082O21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-231N24
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-451A02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-488E02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-323A01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-500H08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-273I13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-413N16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-081A15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-270O14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-194P05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-099E03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-119N10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-170L11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-336F19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-086G18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-086L22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-302P12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-534G06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-133F12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-280I21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-425G11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-404I19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-056P15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-350H05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-170B18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-529B22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-421I23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-414B14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-347J04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-410I09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-291B16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-191K10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-453I09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-429O12
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-200A17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-086K10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-092J13
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-305P12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-098D23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-259I16
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-346I05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-220J04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-053A09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-159F19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-272D03
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-272B01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-245L02
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-195H08
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-242L10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-142B04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-179A12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-261P21
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-269M24
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-184C12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-252A01
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-210E09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-083H09
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-192E14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-245N18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-288C04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-135C03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-156P03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-146F08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-034O06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-283P24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-162G03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-189D22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-278A05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-214C03
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-202H14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-270O17
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-267H05
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-071I24
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-123O18
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-124D22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-289C06
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-201H22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-234H22
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-284O18
singlet/doublet
singlet
plural/unique
unique
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