Query= MSMg01no334_g18.b1 MSMg01no334_g18.b1 CHROMAT_FILE:
MSMg01no334_g18.b1 PHD_FILE: MSMg01no334_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:50 2005
(613 letters)
>mm_chr8_130306358_130307371
Length = 1014
Score = 1133 bits (586), Expect = 0.0
Identities = 607/614 (98%), Gaps = 1/614 (0%)
Strand = Plus / Plus
Query: 1 tgcatttaaagagtgtagtctataggataggggtcagaaaactatctattactgttttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 tgcatttaaagagtgtagtctataggataggggtcagaaaactatctattactgtcttta 260
Query: 61 atatttgctgttgattgcacagggggg-tatattgtggcatgttaaaattatacaaaatt 119
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 atatttgctgttgattgcacagggggggtatattgtggcatgttaaaattatacaaaatt 320
Query: 120 caaatctcagtttccataaatctcatcaaatttcactatatttattttcaagtgacttaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaatctcagtttccataaatctcatcaaatttcactatatttattttcaagtgacttaa 380
Query: 180 aggtttttagactgtgtcagcaaattagaccattgtgatagaaaccatatgttccataag 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggtttttagactgtgtcagcaaattagaccattgtgatagaaaccatatgttccataag 440
Query: 240 gtctaagtctagatcttctggtccttacagagttgccccgtcattctgattagtgagaag 299
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct: 441 gtctaagtctagatcttctggtccttacagacttgccctgtcattctgattagtgagaag 500
Query: 300 ggatggacttcaatcctgcctttcttggctggcctttgcttgagacacaaaggtagtagg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggatggacttcaatcctgcctttcttggctggcctttgcttgagacacaaaggtagtagg 560
Query: 360 taacatgttaaagatgttagagaaagaggtgttatttctctctctattaatgtagaaatc 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taacatgttaaagatgttagagaaagaggtgttatttctctctctattaatgtagaaatc 620
Query: 420 tgttttgaaacaggcagctgagctgtgcgttgtgtaaggacactctttcatggtggaaca 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 tgttttgaaacaggcagctgagctgtgcgttgtgtaaggacactccttcatggtggaaca 680
Query: 480 cagagagttccatggcatttgttccatgagtacaatggctgcaggcacacatacacatgg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagagagttccatggcatttgttccatgagtacaatggctgcaggcacacatacacatgg 740
Query: 540 aaagaaaggagctattacaccagcaggatcagccagcagacattgtcctccattatctgc 599
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 741 aaagaaaggagctattaaaccagcaggatcagccagcagacattgtcctccattatccgc 800
Query: 600 tgtctgctacttgg 613
||||||||||||||
Sbjct: 801 tgtctgctacttgg 814
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1014
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1004
Effective search space: 605412
Effective search space used: 605412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no334_g18.g1 MSMg01no334_g18.g1 CHROMAT_FILE:
MSMg01no334_g18.g1 PHD_FILE: MSMg01no334_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:51 2005
(647 letters)
>mm_chr8_130500647_130501693
Length = 1047
Score = 1230 bits (636), Expect = 0.0
Identities = 645/648 (99%), Gaps = 2/648 (0%)
Strand = Plus / Minus
Query: 1 accccaaatgtgtattcaattaaactgggatatgtctgaacatgaggctctaggaaattc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 accccaaatgtgtattcaattaaactgggatatgtctgaacatgaggctctaggaaattc 710
Query: 61 caagtgattctaatgtacaagcaaagtcagaagcattctgctatggaaactatccagatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 caagtgattctaatgtacaagcaaagtcagaagcattctgctatggaaactatccagatc 650
Query: 121 tcctttaggcttagtagaggcagccctgactgtcagcagcagaagcagaaaagcaacaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tcctttaggcttagtagaggcagccctgactgtcagcagcagaagcagaaaagcaacaca 590
Query: 181 gcccagcaaagccactagcagcctggaaagcttcctacatacgtagtggcctccag-cca 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 589 gcccagcaaagccactagcagcctggaaagcttcctacatacgtagtggcctcc-gccca 531
Query: 240 ggtgaagctgcgttctcatctttgcctcagaaaagaacgaggcagagtggtgtaaaattt 299
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 530 ggtgaagctgcgttctcatctttgcctcagaaaagaatgaggcagagtggtgtaaaattt 471
Query: 300 tttgaatttactaagtatgaagacagaaactcatgtaggaaagaacacagtctcaagcat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tttgaatttactaagtatgaagacagaaactcatgtaggaaagaacacagtctcaagcat 411
Query: 360 gggacaagcttcttgagagacatgtttatttgtctttatcatattagtgcatggatcctg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 gggacaagcttcttgagagacatgtttatttgtctttatcatattagtgcatggatcctg 351
Query: 420 aggctttatgagttacactactcaaaggatgtaatttatagcaaggtctagaacagtggt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aggctttatgagttacactactcaaaggatgtaatttatagcaaggtctagaacagtggt 291
Query: 480 tctcaaccttcctaatgctacaaccctttaatacagttcctcgtgttgtggtaacctaca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 tctcaaccttcctaatgctacaaccctttaatacagttcctcgtgttgtggtaacctaca 231
Query: 540 accaaaaaattatttttgctgctgcttcatacctggaatattgctactgttatgaattgt 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 accaaaaaattatttttgctgctgcttcatacctggaatattgctactgttatgaattgt 171
Query: 600 tatgctaataactgtgttttataatgatcttaggtgacccctgtgaaa 647
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 tatgctaataactgtgttttataatgatcttaggtgacccctgtgaaa 123
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
