BAC Information

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BAC

Clone NameMSMg01-334I10
Chromosome8 (Build37)
Map Location 60,021,152 - 60,021,496
singlet/doubletsinglet
Overlap geneGalnt7
Upstream geneBC088983, Fbxo8, LOC100040431, EG624433, LOC654355, LOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012
Downstream geneLOC100040634, LOC100040711, 4930431L04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334I10.T7 (MSMg01no334_i10.b1)MSMg01-334I10.TJ (MSMg01no334_i10.g1)
ACCAG450001AG450002
length697699
length of high quality
(start - end)
246 (54 - 299)345 (57 - 401)
definitionCHROMAT_FILE: MSMg01no334_i10.b1 PHD_FILE: MSMg01no334_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:59 2005CHROMAT_FILE: MSMg01no334_i10.g1 PHD_FILE: MSMg01no334_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:21:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GACTCACTAGATGCTGAGGTNGCGCGGAATTCTTTGGGTTTCCAACATAC
ATTGCCACAGAGTACTAGGTCTACAGATGCAAATGGCCACAGTAACTTTT
TCTCAGGAGGGTTCTGGGGATCAATTGTGCATCTATTGGGCTGGAGAGAT
GGCTCAGCAGTTAGGAGCACTGACTGCTCTTCCAAAGATCCTGAGTTCAA
TTCCCAGAAACCATATGGTGGCTCCCAACCATCTGTAATAGGATCCGAAG
CACTCTTCTAGTGTGTGTCTGAAGCCAGGTGCACTGTACTCATATAATTT
TTTATAAGAAAGAAATCTTTTTAAAAAATGTACCTGTATCAACTTTACTC
AATAAGCTAGCTCCCAGCTCCAATGACTTTAATTTAGGACTTTCACTCTC
ACACTATACAGAGACTCTAAGTCCTGTGCAAATTAAAACGAACGTAACTC
TAAATAGTATTAAAGTCAAATAGAATAACTATATATAAATGCAACAATGA
ATCTGATAGATTAGAGAACATGTTTTATTTCCTTTGCCGGGGTAGGAGAG
GAGTATTCAGTAATAGTATCAGACAGAATCAAGTAACACTATGGCCTACC
CTTAGCAATGTGAGATAGCTTGCCCTCTACTTTTTCTGTGAGTCATTTGA
TGATACCTTAGTCATGCATTTACCCTTTTTTTGGCGAATACTACGTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXATCAAAGCGCTGAGGCTGCAAGGAGTAAAAGCTCTGTCGGGATC
TGAGGGGACAGACAGCTCCAGTTCTTACAGGGAGGTTTCAGCAGGGCCAG
AGGGTTAATAGGTTAGCAGCAACCGGAGAAAGGGGGGAGGTAGGTAAGCG
ACTTAGTGATTACCGATACGGCTCAGTTTTTGTCTTTCTCAGTCTCTTCT
CTCGAGAGGTCAGAGGCACCCGTTTCCAGAGCATACTCCAGTCCCATGCT
CCTCGGGCATACCCATCTTCATCACCACCCCCTTGGGGTATAATTTCATA
TGTGTTGCCGCTTATGACATCTATAATCGGTACAGCGCAAATGGTTCTGT
GTCGCGTTGATGATGCAGCAAGGTCAAATGGATACATATGTATGGACCCA
CATAGTTACACGAGTTCATAGGGAAGGAAAAAAAAGAGGACTTAGGTCAC
CATTCACCATTAAAAAAAAGTACAGTAACACTCTTTTACCGATAAGGCTC
AGTTTTATGCTTTCTTTTGGTCTTTTCCTTGTGGCTTACTGGGATACGTT
TTCACACCCCACTCTAGTCCTTGGACCCTCTGGTACAATCATCTTCCTCC
CCATCTTGCTGCGGTTCTATGGTATAATCATCCCCGTCTACGTAATCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_i10.g1 MSMg01no334_i10.g1 CHROMAT_FILE:
MSMg01no334_i10.g1 PHD_FILE: MSMg01no334_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:21:59 2005
         (345 letters)



>mm_chr8_60020952_60021696
          Length = 745

 Score =  644 bits (333), Expect = 0.0
 Identities = 342/345 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcaaagcgctgaggctgcaaggagtaaaagctctgtcgggatctgaggggacagacagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcaaagcgctgaggctgcaaggagtaaaagctctgtcgggatctgaggggacagacagc 260

                                                                       
Query: 61  tccagttcttacagggaggtttcagcagggccagagggttaataggttagcagcaaccgg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tccagttcttacagggaggtttcagcagggccagagggttaataggttagcagcaaccag 320

                                                                       
Query: 121 agaaaggggggaggtaggtaagcgacttagtgattaccgatacggctcagtttttgtctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaaggggggaggtaggtaagcgacttagtgattaccgatacggctcagtttttgtctt 380

                                                                       
Query: 181 tctcagtctcttctctcgagaggtcagaggcacccgtttccagagcatactccagtccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctcagtctcttctctcgagaggtcagaggcacccgtttccagagcatactccagtccca 440

                                                                       
Query: 241 tgctcctcgggcatacccatcttcatcaccacccccttggggtataatttcatatgtgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctcctcgggcatacccatcttcatcaccacccccttggggtataatttcatatgtgtt 500

                                                        
Query: 301 gccgcttatgacatctataatcggtacagcgcaaatggttctgtg 345
           |||||||||||||||||||||||| |||| |||||||||||||||
Sbjct: 501 gccgcttatgacatctataatcggcacagtgcaaatggttctgtg 545


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)