Query= MSMg01no336_f04.b1 MSMg01no336_f04.b1 CHROMAT_FILE:
MSMg01no336_f04.b1 PHD_FILE: MSMg01no336_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:21 2005
(555 letters)
>mm_chr8_63412170_63413124
Length = 955
Score = 975 bits (504), Expect = 0.0
Identities = 540/556 (97%), Gaps = 8/556 (1%)
Strand = Plus / Plus
Query: 4 ggaattcttacttataccatggacgatgaacagcaactgataataactgtaggtattggc 63
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 204 ggaattcttacttataccatggacgatgaacagcaactgataacaactgtaggtattggt 263
Query: 64 taatttctaaagatttctttacctacacagcttttaaaagtcactataatttattttttt 123
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taatttctaaatatttctttacctacacagcttttaaaagtcactataatttattttttt 323
Query: 124 ttt----aaaaaaaatatgagatggctcagaggtaaaagcactgtctgttcttccagagg 179
||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttttttaaaa----tatgagatggctcagaggtaaaagcactgtctgttcttccagagg 379
Query: 180 tcctgagttcaggtcccagccaccacatggtggctcataaccatctgtaatcagatctgg 239
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 380 tcctgagttcaggtcccagccaccacatagtggctcataaccatctgtaatcagatctgg 439
Query: 240 tgccctcttctggtctacagacatacatgcaggcagaatgctatataaataataaataaa 299
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 440 tgccctcttctggcctacagacatacatgcaggcagaatgctgtataaataataaataaa 499
Query: 300 taagtgtacttttttaaaaagttagaaaaaaccctaatttttaaaaagtacaaaatagca 359
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 taagtgtactttttaaaaaagttagaaaaaaccctaatttttaaaaagtacaaaatagca 559
Query: 360 gtaaatgagttcaagcctaaattactactgaaaccaacaagcaagcaagcatctatacta 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gtaaatgagttcaagcctaaattactactgaaaccaacaagcaagcaagcatctatacta 619
Query: 420 ctcacctactgtgggcaattttttccttagaatataaaatcaccaagtttataagtcatt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ctcacctactgtgggcaattttttccttagaatataaaatcaccaagtttataagtcatt 679
Query: 480 tactatttataagactatttactatagtcaatggttttagaaagaaaagaatatattacc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tactatttataagactatttactatagtcaatggttttagaaagaaaagaatatattacc 739
Query: 540 ataagaatcaaacagc 555
|||||| |||||||||
Sbjct: 740 ataagactcaaacagc 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_f04.g1 MSMg01no336_f04.g1 CHROMAT_FILE:
MSMg01no336_f04.g1 PHD_FILE: MSMg01no336_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:21 2005
(563 letters)
>mm_chr8_63548686_63549648
Length = 963
Score = 1015 bits (525), Expect = 0.0
Identities = 543/549 (98%)
Strand = Plus / Minus
Query: 1 attgttaacatggaattgtcttactggaaattatctacatgcttcagcaaaactctcaga 60
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 549 attgttaacatggaattgtcttactggaaattatcgacatgcttcagcaaaactctcaga 490
Query: 61 tgacccaattttctactttctacaaccatgtttaacgtttcttccaacgtaaagcggtca 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 489 tgacccaattttctactttctacaaccatgtttaacgtttcttccaacgtaaagcgttca 430
Query: 121 tggtccacttttccatctattattatccgtgtgtggtaaatgtagtgattatttccattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tggtccacttttccatctattattatccgtgtgtggtaaatgtagtgattatttccattt 370
Query: 181 cctggtgtcaatcagttttcttaaccctctataaatctgctttctaattcaattataatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cctggtgtcaatcagttttcttaaccctctataaatctgctttctaattcaattataatt 310
Query: 241 aaatttttcccataaggtcactagtagtatcagaaatgattcaaatggagccttctgatc 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aaatttttcccctaaggtcactagtagtatcagaaatgattcaaatggagccttctgatc 250
Query: 301 attaaaaatttttttctctaaaaattacttttgattgaatctacttcacatatatatgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 attaaaaatttttttctctaaaaattacttttgattgaatctacttcacatatatatgta 190
Query: 361 tatatatatgtatgtatatgtatatatatttctcataaatacaggtggtttactacgagg 420
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 189 tatatatatgtatgtatatgtatatatatttctcataaatacaggtggtatactacgggg 130
Query: 421 aaactttaaaaaattaaaaaaaaacattaaacattataaagctagcatttgagaacctta 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 aaactttaaaaaattaaaaaaaaacattaaacattataaagctagcatttgagaacctta 70
Query: 481 actttaaagaaattatctcccatatatccttttatatgtatgtatgaatgcatacagcat 540
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 attttaaagaaattatctcccatatatccttttatatgtatgtatgaatgcatacagcat 10
Query: 541 gttttcata 549
|||||||||
Sbjct: 9 gttttcata 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space: 527009
Effective search space used: 527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
