Query= MSMg01no336_j09.b1 MSMg01no336_j09.b1 CHROMAT_FILE:
MSMg01no336_j09.b1 PHD_FILE: MSMg01no336_j09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:41 2005
(444 letters)
>mm_chr8_124372228_124373072
Length = 845
Score = 799 bits (413), Expect = 0.0
Identities = 437/445 (98%), Gaps = 1/445 (0%)
Strand = Plus / Plus
Query: 1 aaatgtcacccactctgcagccagcttcctggtgcctcttatcgatgcatctctgctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatgtcacccactctgcagccagcttcctggtgcctcttatcgatgcatctctgctcca 260
Query: 61 cttcatttcaccagttccttgccagttgcatcattcacagactgggccaagaacagggga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcatttcaccagttccttgccagttgcatcattcacagactgggccaagaacagggga 320
Query: 121 tgtggctagcaccctgcccagaagggaagtttcagaactggcttccacgaagaacaaaca 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 tgtggctagcaccctgcccggaagggaagtttcagaactggcttccacgaagagcaaaca 380
Query: 181 cctggcccctccagtggccttgattggaaccttcagacaatcagtaaaagagaacctcga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctggcccctccagtggccttgattggaaccttcagacaatcagtaaaagagaacctcga 440
Query: 241 ggggaactgagagtccgtggctgtttccacagctctgcagctgatacttaagggcggctg 300
||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 ggggaactgagagtccgtgactgtttccacagccctgcagctgatacttaagggcggctg 500
Query: 301 ccaggggccatcaacatgtgtggtggtggctgtgacatcaccaacgtggaaaactagctg 360
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 ccaggggccatcagcatgtgtggtggtggctgtgacatcaccgacgtggaaaactagctg 560
Query: 361 gctcctgaggcaggcagg-agaaagcaccaggggctccaaactgtgataggagtggtgtt 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gctcctgaggcaggcagggagaaagcaccaggggctccaaactgtgataggagtggtgtt 620
Query: 420 taaaaaactaacctgctggagagat 444
| |||||||||||||||||||||||
Sbjct: 621 ttaaaaactaacctgctggagagat 645
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 845
Length adjustment: 10
Effective length of query: 434
Effective length of database: 835
Effective search space: 362390
Effective search space used: 362390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_j09.g1 MSMg01no336_j09.g1 CHROMAT_FILE:
MSMg01no336_j09.g1 PHD_FILE: MSMg01no336_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:41 2005
(240 letters)
>mm_chr8_124548106_124548744
Length = 639
Score = 426 bits (220), Expect = e-124
Identities = 235/240 (97%), Gaps = 1/240 (0%)
Strand = Plus / Minus
Query: 1 cacagtgccttctcctcagatgcctggcctagcagctccgtaagcccttccaatgcctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 cacagtgccttctcctcagatgcctggcctagcagctccgtaagcccttccaatgcctga 380
Query: 61 ggcagataggcctcaacagctcctgggagaagtaaaatcccgagcagcctacagccaaag 120
|||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 379 ggcagacaggcttcaacagctcctgggagaagtaaaatcctgagcagcctacagccaaag 320
Query: 121 ccctattctcgagttcaggtgagcggaaccctgtgagagcctgcgctgctcactacacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ccctattctcgagttcaggtgagcggaaccctgtgagagcctgcgctgctcactacacca 260
Query: 181 ggcttaggccacagaggaaggagctccaggaaagctgcctgtgccagcagctgtgcagaa 240
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggcttaggccgcagaggaaggag-tccaggaaagctgcctgtgccagcagctgtgcagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 639
Length adjustment: 9
Effective length of query: 231
Effective length of database: 630
Effective search space: 145530
Effective search space used: 145530
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
