BAC Information

Click to search

BAC

Clone NameMSMg01-338B23
Chromosome8 (Build37)
Map Location 4,633,874 - 4,634,374
singlet/doubletsinglet
Overlap genenone
Upstream geneStxbp2, Retn, 1810033B17Rik, LOC664858, Trappc5, Fcer2a, Clec4g, Cd209a, LOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267
Downstream geneLOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568, LOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275, LOC623409
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338B23.T7 (MSMg01no338_b23.b1)MSMg01-338B23.TJ (MSMg01no338_b23.g1)
ACCAG452732AG452733
length782720
length of high quality
(start - end)
505 (42 - 546)---
definitionCHROMAT_FILE: MSMg01no338_b23.b1 PHD_FILE: MSMg01no338_b23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:41 2005CHROMAT_FILE: MSMg01no338_b23.g1 PHD_FILE: MSMg01no338_b23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAAGGGCAAACCGCTGCACCAGGCCATAAAATCAGCAAGGACTGCCTAC
TAGACCAATCCAAGAGGGCAGAGCTAGCCACCATAGACATGTGCCTGCCT
GAGGAACCAGTAAATACACAGAAGGACAAAAGGAACATTTCCCAGCGCTG
TGGCATGACTGAGGAGGCCCAGACTTCTGAATAGAAAAGCTAGCTCATCT
TCTTGAGCCTTGACTCAGTTTCTAGGCACAGCTTTATAACTAGAGGCCCC
TGAGCTAACTCAGCTGGTGGTCTCTCAGGCCATTATGTATAAGTTTGAAA
ACAGTAAAGTAGATATAAATACTTAGTTGAAAATAATCAAATAAGATATT
TCAAGAGAGAGATAAATAATATTAAAAAGGTTTCCCCAGACAAAAGATTT
TAGAGAAAATTCAATACACAAAAAAGACATTAAGTTTAGAAAGCAATGAG
AGAAATAAATATCCTAGAAAATAAAGTCTCTAAAGAAATAAAAGAAAGTG
AAAAAGTGTTAATAATAAAGAGAGAGATAGAAAAGTAAGGTTTCAAAAGA
TGGAGAGATTTAAAAGAAATATTTTCCATATAAAAAATGGAAAACACAGT
ANGAAAAAGCCCTTTGGGCTCATATAGTTTTGGTTTTGACTGCCCCCATA
AAAATAAAGAAATGGACCACTTTTATATGTCCTTTTTTAAGAAAATTCGA
AATAAAGCCGACTTTTCAAAGGGAAAGAATTA
AAAGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGGGGGACAAGACAAAGAAGGGAAAAATTACCAC
TATGANNAGTCACAGTTAGTGACTGAGGAGTGAGTAAACTTTTTTAACTT
CCGCGGGTGTTAAGAGGGGGGCGGTAGGGTGCGGATGAGGGGGGCGGAGG
AGCGCGAGGGGGGGGAGGCGGAGGGCGAGAGGAGGGGGAGAAAGCAAAAA
GGCTGCAACCTTTTTCTAGTCCTGAAAATGGAACCCCTTATCTTAAAAAA
AAAAAAAAGGTTCCGGGAATGGGGCTTTTCCCCCCCCGCTCCGGGGGGGG
AACATTTTTTTAGGGGCGAAACCCCCAAAAACCCCCCCTCTAAAATAACT
TTTGTGCCCCCGGGGGGGAAAAAATTTGGCCCCCCCGTGGTTTCTTTCTT
TTTCCCCCCCGAAAAAAAAACCCCCCCGGGGATCTCTCCTCTTTTATAAA
AAAAAAAAAAAACCCCCCCCCCCCCATCAAAATAATCCCGCGGTGGGGGN
NNNNNNNNTTTATCCTGGAAGAAAAATTACCCCCACGACCGTGCTGGGGG
GAATTTTCCTTCTAAAGGCCGTTTAAAAGGGGCTTTCTTTTTTTTTTTTT
TTTGTCTGGTAAAATATATAAAAATCACCNNCCTCAANCACTTAATATTT
CTCTCTCCTCTCATTTGTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_b23.b1 MSMg01no338_b23.b1 CHROMAT_FILE:
MSMg01no338_b23.b1 PHD_FILE: MSMg01no338_b23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:41 2005
         (505 letters)



>mm_chr8_4633671_4634574
          Length = 904

 Score =  955 bits (494), Expect = 0.0
 Identities = 500/502 (99%), Gaps = 1/502 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaagggcaaaccgctgcaccaggccataaaatcagcaaggactgcctactaga 63
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaagggcaaacagctgcaccaggccataaaatcagcaaggactgcctactaga 263

                                                                       
Query: 64  ccaatccaagagggcagagctagccaccatagacatgtgcctgcctgaggaaccagtaaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccaatccaagagggcagagctagccaccatagacatgtgcctgcctgaggaaccagtaaa 323

                                                                       
Query: 124 tacacagaaggacaaaaggaacatttcccagcgctgtggcatgactgaggaggcccagac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tacacagaaggacaaaaggaacatttcccagcgctgtggcatgactgaggaggcccagac 383

                                                                       
Query: 184 ttctgaatagaaaagctagctcatcttcttgagccttgactcagtttctaggcacagctt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttctgaatagaaaagctagctcatcttcttgagccttgactcagtttctaggcacagctt 443

                                                                       
Query: 244 tataactagaggcccctgagctaactcagctggtggtctctcaggccattatgtataagt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tataactagaggcccctgagctaactcagctggtggtctctcaggccattatgtataagt 503

                                                                       
Query: 304 ttgaaaacagtaaagtagatataaatacttagttgaaaataatcaaataagatatttcaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttgaaaacagtaaagtagatataaatacttagttgaaaataatcaaataagatatttcaa 563

                                                                       
Query: 364 gagagagataaataatattaaaaaggtttccccagacaaaagattttagagaaaattcaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gagagagataaataatattaaaaaggtttccccagacaaaagattttagagaaaattcaa 623

                                                                       
Query: 424 tacacaaaaaagacattaagtttagaaagcaatgagagaaataaatatcctagaaaataa 483
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tacacaaaaa-gacattaagtttagaaagcaatgagagaaataaatatcctagaaaataa 682

                                 
Query: 484 agtctctaaagaaataaaagaa 505
           ||||||||||||||||||||||
Sbjct: 683 agtctctaaagaaataaaagaa 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 904
Length adjustment: 10
Effective length of query: 495
Effective length of database: 894
Effective search space:   442530
Effective search space used:   442530
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)