Query= MSMg01no339_j08.b1 MSMg01no339_j08.b1 CHROMAT_FILE:
MSMg01no339_j08.b1 PHD_FILE: MSMg01no339_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:27 2005
(454 letters)
>mm_chr8_89242437_89243290
Length = 854
Score = 743 bits (384), Expect = 0.0
Identities = 432/454 (95%), Gaps = 10/454 (2%)
Strand = Plus / Minus
Query: 1 agaaacgtctagaagaataataaacgggcagaaccaattgacactaacctataaagttga 60
||||| ||||||| |||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct: 673 agaaaagtctagaggaataataaatgggcagaaccaattgaaactaacctataaagttga 614
Query: 61 taaccaaggtacacagctttcctcagctttgatacctgaaactttctgtgcatgtgagaa 120
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 613 taaccaaggtacacagcttccctcagctttgatacctgaaaatttctgtgcatgtgagaa 554
Query: 121 tgccagctgtgcatgtgagaatgtagctggggttgaggtgtagtgtagttcagtgtttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tgccagctgtgcatgtgagaatgtagctggggttgaggtgtagtgtagttcagtgtttgg 494
Query: 181 gtacttactcagcatattcaaggccctatatttaatcccaagtaccatccaacacaaaca 240
| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 493 g----------gcatattcaaggccctatatttaatcccaagtaccatcctacacaaaca 444
Query: 241 cacacacccctcagaaagctggacagaattattgtagatcatttgcttggggggtgatct 300
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 443 cacacacccctcagaaagctggacagaattattgtatatcatttgcttggggtttgatct 384
Query: 301 ggaggcagaagtcccaggttaatcaatcagttggtaagttgaatggtgaggtccatgtgc 360
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gcaggcagaagtcccagattaatcaatcagttggtaagttgaatggtgaggtccatgtgc 324
Query: 361 tcctgcttccaagatggcgcctcagtgctagcctcctggtggaggagtacacaggcagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcctgcttccaagatggcgcctcagtgctagcctcctggtggaggagtacacaggcagag 264
Query: 421 tagctagctagttttcttggaccctttcctattg 454
||||||||||||||||||||||||||||||||||
Sbjct: 263 tagctagctagttttcttggaccctttcctattg 230
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space: 374736
Effective search space used: 374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no339_j08.g1 MSMg01no339_j08.g1 CHROMAT_FILE:
MSMg01no339_j08.g1 PHD_FILE: MSMg01no339_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:27 2005
(476 letters)
>mm_chr8_88997180_88998055
Length = 876
Score = 890 bits (460), Expect = 0.0
Identities = 472/476 (99%)
Strand = Plus / Plus
Query: 1 ctggagagcccaaggaaaatgcattctggtcccgacagagccagacatcaaacgtgagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggagagcccaaggaaaatgcattctggtcccgacagagccagacatcaaacgtgagga 260
Query: 61 tcacaacttgtgccccaagccaggtctggccacttatcctccataagccaattaaaagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacaacttgtgccccaagccaggtctggccacttatcctccataagccaattaaaagag 320
Query: 121 ccaaattaataatgaaaagcagacaaagatttattcaatgtggacacactgggcaaggga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaaattaataatgaaaagcagacaaagatttattcaatgtggacacactgggcaaggga 380
Query: 181 tcaaagagatccagtaaacccctcaagtctgtctgctgggatgctgaggttaaagtttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaaagagatccagtaaacccctcaagtctgtctgctgggatgctgaggttaaagtttaa 440
Query: 241 acagagggccaaggatcggcacatataagcagttctgtcaagatgtggttccgcccacca 300
|||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct: 441 acagagggccaaggatcggcacatataaacagttctgtcaagatgtggtcccgtccacca 500
Query: 301 ctgacccatccttgtctgggcttcagtctcattttatgatgtggtctggcagggtgttag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgacccatccttgtctgggcttcagtctcattttatgatgtggtctggcagggtgttag 560
Query: 361 aacttcgaggactcactttctgggacacgagtcctccctctagctggcaccttttccttc 420
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 561 aacttcgaggactcactttctgggacacgaatcctccctctagctggcaccttttccttc 620
Query: 421 tcctggtgtgagattcctggggaatgcccattttcggggaagtgtccattgtttca 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tcctggtgtgagattcctggggaatgcccattttcggggaagtgtccattgtttca 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 876
Length adjustment: 10
Effective length of query: 466
Effective length of database: 866
Effective search space: 403556
Effective search space used: 403556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
