Query= MSMg01no340_b09.b1 MSMg01no340_b09.b1 CHROMAT_FILE:
MSMg01no340_b09.b1 PHD_FILE: MSMg01no340_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:03 2005
(626 letters)
>mm_chr8_59626505_59627531
Length = 1027
Score = 1152 bits (596), Expect = 0.0
Identities = 617/624 (98%), Gaps = 3/624 (0%)
Strand = Plus / Minus
Query: 5 gaattccaagtatttcaaatgttcacccctattcccctacaatattatttaaatcacaaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 gaattccaagtatttcaaatgttcacccctattcccctacaatattatttaaatcacaaa 768
Query: 65 actgtgtatttagcaatttttattacagattataattctactctaaaacttgcaatacac 124
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 actgtgtatttagcgatttttattacagattataattctactctaaaacttgcaatacac 708
Query: 125 tgagtgtagtcatgcaccgtgtttgtttgg-aaaaaactattccaggactaaagaaaagc 183
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 707 tgagtgtagtcatgcaccgtgtttgtttggaaaaaaactattccaggactaaagaaaagc 648
Query: 184 tgcttggcgaatcccacagtgtcttgatctgtttggccacacaagagggtactgtcttct 243
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 647 tgcctggcgaatcccacagtgtcttgatctgtttggccacacaagagggtactgccttct 588
Query: 244 ccagaaaatgtctctgtagctactgttttctatttatgttgcttcgcagacactgctggc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ccagaaaatgtctctgtagctactgttttctatttatgttgcttcgcagacactgctggc 528
Query: 304 tttatttcacttggaaacttatttattttggttttccctgccaagagttcattccctgtt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 tttatttcacttggaaacttatttattttggttttccctgccaagagttcattccctgtt 468
Query: 364 tttagactttatcatttttattataatgaattgtgggaagtagcgtctgacactccacaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tttagactttatcatttttattataatgaattgtgggaagtagcgtctgacactccacaa 408
Query: 424 tatcccgatcatcatgcttttatggtcatttggattaatgcccaaacttcttataagtat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 tatcccgatcatcatgcttttatggtcatttggattaatgcccaaacttcttataagtat 348
Query: 484 ttgaaaatgaagctaatattttagagatccttttgtgaacatgacacagatatttcctta 543
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 347 ttgaaaatgaagctaatattttagagatccttttgtgaacatgatacagatatttcctta 288
Query: 544 cgtatgttatactggcacaatagtttaattaacatctacacagtcaggcatctacatttc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 cgtatgttatactggcacaatagtttaattaacatctacacagtcaggcatctacatttc 228
Query: 604 ggaaaactgc-actactttctcaa 626
|| ||||||| |||||||||||||
Sbjct: 227 gg-aaactgcaactactttctcaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 626
Length of database: 1027
Length adjustment: 10
Effective length of query: 616
Effective length of database: 1017
Effective search space: 626472
Effective search space used: 626472
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_b09.g1 MSMg01no340_b09.g1 CHROMAT_FILE:
MSMg01no340_b09.g1 PHD_FILE: MSMg01no340_b09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:03 2005
(558 letters)
>mm_chr8_59419011_59419967
Length = 957
Score = 984 bits (509), Expect = 0.0
Identities = 541/558 (96%), Gaps = 11/558 (1%)
Strand = Plus / Plus
Query: 1 cagattaaacttcatttttcatgtttcaaatgagcgtatatcaaagaatgaaacttttta 60
||||||||||||||||||| ||||||||| ||||||||||||||||| |||
Sbjct: 211 cagattaaacttcatttttaatgtttcaa----------atcaaagaatgaaacttctta 260
Query: 61 agggatttacaacatttactagatgaagtgtgttcattttctgctgataggatgggggag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggatttacaacatttactagatgaagtgtgttcattttctgctgataggatgggggag 320
Query: 121 gaacaaatgagcccctacctgtaactgaagcactactaacagttgatagttgttaacaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaacaaatgagcccctacctgtaactgaagcactactaacagttgatagttgttaacaga 380
Query: 181 tgaagaatcaggttttttaaaatcttaattttaaggatagagtccccggtagattgacca 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 tgaagaatcaggttttttaaaatcttcattttaaggatagagtccccggtagattgacca 440
Query: 241 tgctctaggggatgcatatatagatggcaataattggatttagtggattatgaataagca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctctaggggatgcatatatagatggcaataattggatttagtggattatgaataagca 500
Query: 301 aattaaaacaaaatcgaggacataatgttagaaaactaatggagtcttcaaggaataatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattaaaacaaaatcgaggacataatgttagaaaactaatggagtcttcaaggaataatc 560
Query: 361 aaaggagaagtgggatacacatgataaaaaatgtatatgcatgtatgaaattctcagaat 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaggggaagtgggatacacatgataaaaaatgtatatgcatgtatgaaattctcagaat 620
Query: 421 aaatcttanatgttatttaaaaaaataactatctaactcaaacctcagttaacttatgag 480
|||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatcttaaatgttatttaaaaaa-taactatctaactcaaacctcagttaacttatgag 679
Query: 481 atagaacatagtctcaaaaatatcttctgttttgaattttattatttaacaatggcatgt 540
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 680 atagaacatagtctcaaaaatattttctgttttgaattttattatttaacaatggcatgt 739
Query: 541 gcctagtattatgttatg 558
||||||||||||||||||
Sbjct: 740 gcctagtattatgttatg 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 957
Length adjustment: 10
Effective length of query: 548
Effective length of database: 947
Effective search space: 518956
Effective search space used: 518956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
