Query= MSMg01no340_g02.b1 MSMg01no340_g02.b1 CHROMAT_FILE:
MSMg01no340_g02.b1 PHD_FILE: MSMg01no340_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:23 2005
(565 letters)
>mm_chr8_74414893_74415857
Length = 965
Score = 754 bits (390), Expect = 0.0
Identities = 525/586 (89%), Gaps = 27/586 (4%)
Strand = Plus / Plus
Query: 6 aattcattaattctttttaagatccctgtgactaaacactaactggtcaataattcagaa 65
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 206 aattcattaattcgttttaagatccctgtaactaaacactaactggtcaataattcagaa 265
Query: 66 gataaatcattagagtgttaaattctaattttgactcttgtaaataaattttcagatgac 125
||||||||| |||| |||| | || |||||||||||||||||| ||||||||||||||||
Sbjct: 266 gataaatcactagaatgtttacttataattttgactcttgtaagtaaattttcagatgac 325
Query: 126 ctaatctcttagtgtctttaagcagtaaggcatgaatttaatgggttgtgtctttacaag 185
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctaatctctaagtgtctttaagcagtaaggcatgaatttaatgggttgtgtctttacaag 385
Query: 186 tcatgtacatttcttctttctgtattggattcaaatgagatgcattcctaatatgtttta 245
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 386 tcatgtacatttcttctttctgtattggattcaaatgagatgtattcctaatatgtttta 445
Query: 246 gagtaatgttaatgagctgttgaaaaatgaagttttatttcaaggctttctctattgaaa 305
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
Sbjct: 446 gagtaatgttaatgagctgttgaaaaatgaaattttatttttaggctttctctattgaca 505
Query: 306 tcatatgggaacttcttatctttgatatttttgtatttgtc------------------- 346
|||| ||||||||||||||||||||||||||||||||| ||
Sbjct: 506 tcatgtgggaacttcttatctttgatatttttgtatttctcttgtttgttttttgttgtt 565
Query: 347 ------ggattttcatttgagtcagggtttctctgtgtaaccctgggtatccc-agaact 399
||||||||||||||||||||||||||||||||| |||||| || ||| ||| ||
Sbjct: 566 gttgttggattttcatttgagtcagggtttctctgtgtagccctggcta-ccctagagct 624
Query: 400 gctttcttacaccaggctggcatcaaacttcaagatctacctgtctctgtttccctagtg 459
| || |||| ||||| |||||||||||||| ||||||| ||||||||| ||||| ||||
Sbjct: 625 ggttccttagaccagactggcatcaaacttggagatctatctgtctctgcttcccaagtg 684
Query: 460 ctgagaataaaggagagtgccaccatgctgggctttatctttgatgtttatactatatct 519
||| ||||||||| | |||||| ||||||||||||||||||||||||||||||| | |||
Sbjct: 685 ctgggaataaaggtgtgtgccatcatgctgggctttatctttgatgtttatactgtgtct 744
Query: 520 tttctattcttctcattgttaatgccaaatacttgaaacaacttaa 565
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tttctattcttctcattgttaatgccaaatacttgaaacaacttaa 790
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_g02.g1 MSMg01no340_g02.g1 CHROMAT_FILE:
MSMg01no340_g02.g1 PHD_FILE: MSMg01no340_g02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:23 2005
(521 letters)
>mm_chr8_73409257_73410177
Length = 921
Score = 1007 bits (521), Expect = 0.0
Identities = 521/521 (100%)
Strand = Plus / Plus
Query: 1 gcctgccggggctaagtgagaccctgtctcaaaaggaaatatatgactaaaagagaatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcctgccggggctaagtgagaccctgtctcaaaaggaaatatatgactaaaagagaatat 260
Query: 61 agcctgtgctgagtgcggtgatgcgcacatgtcatccaagtactcataaaggtgaggctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcctgtgctgagtgcggtgatgcgcacatgtcatccaagtactcataaaggtgaggctg 320
Query: 121 gaggattgtcatgagggtcagcctgagctgcagagagagatcccccacccccatgtcaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggattgtcatgagggtcagcctgagctgcagagagagatcccccacccccatgtcaaa 380
Query: 181 tccaagcaaacaggatgttgttagagcccaagggcctccccatgctgatttgcttcagga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccaagcaaacaggatgttgttagagcccaagggcctccccatgctgatttgcttcagga 440
Query: 241 ccgcggacagcgtcccgcatccccggccatagcagggactttccggaggaacctgcccca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccgcggacagcgtcccgcatccccggccatagcagggactttccggaggaacctgcccca 500
Query: 301 tttagttcccacatctgcaaaatagaaccggccttgtggggcgtctcaaggatgaggtaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttagttcccacatctgcaaaatagaaccggccttgtggggcgtctcaaggatgaggtaa 560
Query: 361 aaatgtgccagctctcagccgcatgggaatctctttcatctctccctttggggagttgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatgtgccagctctcagccgcatgggaatctctttcatctctccctttggggagttgag 620
Query: 421 ggtggagacaggaggaccaaccgctgaccccagaggaggctgctgcacttaccagttagg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggtggagacaggaggaccaaccgctgaccccagaggaggctgctgcacttaccagttagg 680
Query: 481 tagctgatgagagcaccacaaagcatagtggtcaaagtacc 521
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagctgatgagagcaccacaaagcatagtggtcaaagtacc 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
