BAC Information

Click to search

BAC

Clone NameMSMg01-340K23
Chromosome8 (Build37)
Map Location 16,194,335 - 16,194,751
singlet/doubletsinglet
Overlap geneCsmd1
Upstream geneEG234097, EG665619, LOC634008
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340K23.T7 (MSMg01no340_k23.b1)MSMg01-340K23.TJ (MSMg01no340_k23.g1)
ACCAG454663AG454664
length1,019749
length of high quality
(start - end)		---417 (79 - 495)
definitionCHROMAT_FILE: MSMg01no340_k23.b1 PHD_FILE: MSMg01no340_k23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:44 2005CHROMAT_FILE: MSMg01no340_k23.g1 PHD_FILE: MSMg01no340_k23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACTCTATAAGTTGCGGGCTCGCTATGCCGACATCACTGTNAGGTCTATA
CGTATCCCGCGNNGAATTCCAATGCACTACAATTACATGATGAGGCGNTC
GATAGGTCGACAGTAGAGNATGCCGAGAGACTNCACAGGTGCCATCGGGC
GAATTGTGACGGGGGGGGCCAAGAGGTATCGTTNTTGTGGATAGGTGTGT
GNTAGGATCTTTTANTGCCATAGTGCNCCTGGAAGNTCCCCGATCGAGTG
CGTNAACCCTATTAGAAAATGGCAGCAAAAGTACNGACTCCAAGCAGTGN
TGCGCATAAGAGGGCTAGAAAGAGTAAGNCCTNNTGATTGGGCNNCTCNT
AAACTGTCANCTTNAGTTCCNCCGTNATCCANTAGNTNAGCGCTGNNCTG
CGAANNAGATTGTTTAAGCAAGCCNAGCNTACTTTNCACTAGTTGGNNGN
NNATTTATCTGGAGAGTTTGCGTGTGTATTTTAGTGTAANAATTCGNATG
GCCGNGAGTTNNACGATTNTACATAAGGAGNTANTGGTGCTCTTGGNCGT
ANTCGAGTCTGATGAGCTTTTCTCCGGTTCTTCCCCATTANCGCTTCTGN
CCTGTGTTTGAANATTGCACAANCACTATACCNATCTCTTCCTTCTCTAA
CTCTTGCAGTATAGTACTCGTACGTATCTTTAGACTTTCTCAATCTTTGC
CTTCCGTCGTGCTTAGCTCANCTTCCTCTTCTTTCCACTCCTGCTCTCTG
TCTTTTTGTGCATCCATCTTTTTATTACGCTCTTTTACGTAGTTGTCATC
GTTTTCTGTTGTATTCCATCTCTATTCATCGTCACCTTCTCTTCTCCCGC
CTTTTCTTCTCTCCTTTTTACTTCTTCTTACTTCTTCTTTACTAAGCATC
CCGACCTACTTTTCTCCCTCCATCCCATTACTTTACATCCTCTCTATCTT
CACCTTAGCTCTCATACACTTATCCGCTTCCTATACTTGTCTCTAATTAT
CGAGTGTATCCGTGTTCTG

NNNCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATCATTACAACTCTGGTTTTCT
TGGTAAACAGGGTCTTGCACTGTTGTCTTACATGAGGAACAATTTACTGA
GTTTTGCCTGGAGGTTACTGAGAGATTTGCCTGTCTTGATGTATTTACTT
GGTGCTGGATCTAGACAGTAAGCATGGCATTGCCAGCTCTTTTTTATAGT
TACAACAACTTAGACACAATCTCATCAGGAAATCTCATAGCTGGTGGATT
GCCAAGCAACAGATACCATTGGCTTTTACCCACCCACAGATCTGGGGAGA
GCCACACAGAGCTTACATTGGCCTCTCCTCTATTCTGCCTTTTGTAATTT
GCCTGCTGCTGCCTCAATTTCTTTCCAGCACAACAGGTTGCATGACACTG
TGTTAAAGAGTCACAAACTACACTGAATCCAACAGACATAAGGCAGACCT
TGCACCACCTCGGTATCTGCAGTTGCCCACATTCCTAGGCTTCTGGTTCC
TATAACTTCACCAACTATGCAACTCATGATCAGCTCTGACTCTAGGAACT
CTGCTCTTTCTGCACTGAGGAACCTGGGTCTCCACTCTGGGAAACTCATG
TACTTCTTTCTAAAAAACTGCTCAATCCCTTCTGATTTTATTCCAAAGGA
ACCCCCCCATAATTATTATTATTTATAATACCCATTTTATCCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_k23.g1 MSMg01no340_k23.g1 CHROMAT_FILE:
MSMg01no340_k23.g1 PHD_FILE: MSMg01no340_k23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:44 2005
         (417 letters)



>mm_chr8_16194135_16194951
          Length = 817

 Score =  791 bits (409), Expect = 0.0
 Identities = 415/417 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atcattacaactctggttttcttggtaaacagggtcttgcactgttgtcttacatgagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 atcattacaactctggttttcttggtaaacagggtcttgcactgttgtcttacatgagga 558

                                                                       
Query: 61  acaatttactgagttttgcctggaggttactgagagatttgcctgtcttgatgtatttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 acaatttactgagttttgcctggaggttactgagagatttgcctgtcttgatgtatttac 498

                                                                       
Query: 121 ttggtgctggatctagacagtaagcatggcattgccagctcttttttatagttacaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ttggtgctggatctagacagtaagcatggcattgccagctcttttttatagttacaacaa 438

                                                                       
Query: 181 cttagacacaatctcatcaggaaatctcatagctggtggattgccaagcaacagatacca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 437 cttagacacaatctcatcaggaaatctcatagctggtggattgccaagcaacagatgcca 378

                                                                       
Query: 241 ttggcttttacccacccacagatctggggagagccacacagagcttacattggcctctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttggcttttacccacccacagatctggggagagccacacagagcttacattggcctctcc 318

                                                                       
Query: 301 tctattctgccttttgtaatttgcctgctgctgcctcaatttctttccagcacaacaggt 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tctattctgccttttgtactttgcctgctgctgcctcaatttctttccagcacaacaggt 258

                                                                    
Query: 361 tgcatgacactgtgttaaagagtcacaaactacactgaatccaacagacataaggca 417
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tgcatgacactgtgttaaagagtcacaaactacactgaatccaacagacataaggca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |