BAC Information

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BAC

Clone NameMSMg01-341K20
Chromosome8 (Build37)
Map Location 33,036,214 - 33,202,974
singlet/doubletdoublet
Overlap gene2010007E15Rik
Upstream geneLOC547008, Dusp26, Rnf122, BC019943, Rbm13, Fut10, LOC666330, LOC666568, 7420700N18Rik, LOC100041329, EG330731, LOC100041340, Nrg1
Downstream geneEG666589, EG546052, LOC100042715, LOC628408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341K20.T7 (MSMg01no341_k20.b1)MSMg01-341K20.TJ (MSMg01no341_k20.g1)
ACCAG455414AG455415
length761792
length of high quality
(start - end)		376 (39 - 414)355 (70 - 424)
definitionCHROMAT_FILE: MSMg01no341_k20.b1 PHD_FILE: MSMg01no341_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:59 2005CHROMAT_FILE: MSMg01no341_k20.g1 PHD_FILE: MSMg01no341_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,036,214 - 33,036,583)(33,202,620 - 33,202,974)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
TAAGATCTAGGTGCTCCCTGGCTTTACCTGGGTGAGTAAATCAAATGATG
TTAAATGGAATTGATGGGAGGAAGGAGCCTGTTTATGATGGAAAAAAAAA
GAAAATGTAAAGAAATATCTCTATATAAATCCCCTGTAGTCTTGTGGCTG
GATGGTCATTTATATACAGTGGCTTAATCATCTTAAATGCAAATCTTGCT
CTTTGGATTTGTCCCTAGCTTCTATGAAGTTACAGGCATGAGGCAGCTTA
GCTAATAAAAATTTTCTGTCTGATTTTCCCCCTTGAGTCTTAGGACAAAT
GTAACGAAAGCATCCAGAGGGAGTTTATCTTTTAAGAATGTGTGTGTGTG
TGTGTGTGTGTGCGTGTTTCTTTCCCCTTTTTTTCCCCCCTTTCCCCTTT
TTCTTTCCCCCTTACTTTTTTTTCCCTTTTCCCTCATTTACCTCCTCTCA
TTCATCTTTCTTTTCCCCCCCTTCTCCCCCCTTCTTCCCTTTCCCCCCTT
TCTTTCCTTTTTTTTCCCCCCCCTTTTCCCTATTTTCCTTCCCTATTTTT
CTTTTTCTTCTTCCCTCTTTCTTCCCTATTCTTTTACCCCTCATCCTTAT
CCCTCTTTTCTCCTTCCTCCTTTCCCCTATTTCCCTCCCCTTTTTTTCTC
TTTTCCCTTTTACCCTCTTTTTCCTTTTCTTTCCTTCCATTCCTTATTCC
GCTTATCCCCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACAGCTCAACAGAGTTGACCTAAAAACAAAG
GGTAGACATACACTGTAGCAATAAGGATGTGGCTGCACTAGTTTCATAGA
GTAAGGATATTTTCCTTACACTAAAGCATATAGAAGAATAGGCCACTTGA
AAAAAGGTGAGGGATATCAGGGCTCTGTGGAGGAAACAGTGTGTGCCACG
GAGGAGTGCATGGTGTATGTGGGGAAGGGCAGGCAGTTCAGAGTGGCTGG
CACAGAAAGTTCAGGGATGGTAACAAGCTGGCAAGGGGAGAGATTACTGG
AGCCAAAGTAATTGAACTGTGATTGAATTTCAGATATGATAATGTTTACA
AGGATCCTGGCAGTGAGATGAGCAGGTACCTGTGATAGAGCAAGGATACT
TACGCTTCCATGGGATGAAGCAGGACAAGAACCATTTTGAACATCTACCT
ACGATCGGACACCCATGTAGATTACCTTACTCATTTTACCTCCTTACCTT
TCTCCCCCGCCTCCGTACCATTATGCTTTGCTTTTCATTTTACAAATCCC
TCATCGCCCCTCCCCCATTTCTTCCTCCCTTTCTCTGCCTCTTGCTTCCA
TATGCACGTTTTTCTATAATTCTCCTCCCCCATCACATCCTCCGTTTTCT
TCCTTTCCCTTTTTCCATCTCCCTTTCTTTCTCTCTTTCCCTCTCCTCCC
CTCCTTTTTTTCTATTTTTTCCCCCCCCTATTCTTCTCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_k20.b1 MSMg01no341_k20.b1 CHROMAT_FILE:
MSMg01no341_k20.b1 PHD_FILE: MSMg01no341_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:59 2005
         (376 letters)



>mm_chr8_33036010_33036785
          Length = 776

 Score =  708 bits (366), Expect = 0.0
 Identities = 369/370 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctaagatctaggtgctccctggctttacctgggtgagtaaatcaaatgatgtt 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctaagagctaggtgctccctggctttacctgggtgagtaaatcaaatgatgtt 264

                                                                       
Query: 65  aaatggaattgatgggaggaaggagcctgtttatgatggaaaaaaaaagaaaatgtaaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaatggaattgatgggaggaaggagcctgtttatgatggaaaaaaaaagaaaatgtaaag 324

                                                                       
Query: 125 aaatatctctatataaatcccctgtagtcttgtggctggatggtcatttatatacagtgg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaatatctctatataaatcccctgtagtcttgtggctggatggtcatttatatacagtgg 384

                                                                       
Query: 185 cttaatcatcttaaatgcaaatcttgctctttggatttgtccctagcttctatgaagtta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttaatcatcttaaatgcaaatcttgctctttggatttgtccctagcttctatgaagtta 444

                                                                       
Query: 245 caggcatgaggcagcttagctaataaaaattttctgtctgattttcccccttgagtctta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 caggcatgaggcagcttagctaataaaaattttctgtctgattttcccccttgagtctta 504

                                                                       
Query: 305 ggacaaatgtaacgaaagcatccagagggagtttatcttttaagaatgtgtgtgtgtgtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggacaaatgtaacgaaagcatccagagggagtttatcttttaagaatgtgtgtgtgtgtg 564

                     
Query: 365 tgtgtgtgtg 374
           ||||||||||
Sbjct: 565 tgtgtgtgtg 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no341_k20.g1 MSMg01no341_k20.g1 CHROMAT_FILE:
MSMg01no341_k20.g1 PHD_FILE: MSMg01no341_k20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:59 2005
         (355 letters)



>mm_chr8_33202420_33203174
          Length = 755

 Score =  679 bits (351), Expect = 0.0
 Identities = 354/355 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagctcaacagagttgacctaaaaacaaagggtagacatacactgtagcaataaggatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 acagctcaacagagttgacctaaaaacaaagggtagacatacactgtagcaataaggatg 496

                                                                       
Query: 61  tggctgcactagtttcatagagtaaggatattttccttacactaaagcatatagaagaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tggctgcactagtttcatagagtaaggatattttccttacactaaagcatatagaagaat 436

                                                                       
Query: 121 aggccacttgaaaaaaggtgagggatatcagggctctgtggaggaaacagtgtgtgccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aggccacttgaaaaaaggtgagggatatcagggctctgtggaggaaacagtgtgtgccac 376

                                                                       
Query: 181 ggaggagtgcatggtgtatgtggggaagggcaggcagttcagagtggctggcacagaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ggaggagtgcatggtgtatgtggggaagggcaggcagttcagagtggctggcacagaaag 316

                                                                       
Query: 241 ttcagggatggtaacaagctggcaaggggagagattactggagccaaagtaattgaactg 300
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ttcagggatgggaacaagctggcaaggggagagattactggagccaaagtaattgaactg 256

                                                                  
Query: 301 tgattgaatttcagatatgataatgtttacaaggatcctggcagtgagatgagca 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tgattgaatttcagatatgataatgtttacaaggatcctggcagtgagatgagca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 355
Length of database: 755
Length adjustment: 9
Effective length of query: 346
Effective length of database: 746
Effective search space:   258116
Effective search space used:   258116
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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