BAC Information

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BAC

Clone NameMSMg01-342C10
Chromosome8 (Build37)
Map Location 124,174,250 - 124,174,747
singlet/doubletsinglet
Overlap geneZcchc14
Upstream geneCox4nb, Cox4i1, Irf8, LOC100042333, Foxf1a, Mthfsd, Foxc2, Foxl1, 1700018B08Rik, Fbxo31, Map1lc3b
Downstream geneJph3, Klhdc4, Slc7a5, BC048644, Car5a, Banp, Gm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342C10.T7 (MSMg01no342_c10.b1)MSMg01-342C10.TJ (MSMg01no342_c10.g1)
ACCAG455772AG455773
length721675
length of high quality
(start - end)		505 (29 - 533)157 (72 - 228)
definitionCHROMAT_FILE: MSMg01no342_c10.b1 PHD_FILE: MSMg01no342_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:35 2005CHROMAT_FILE: MSMg01no342_c10.g1 PHD_FILE: MSMg01no342_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCGCTATACGACTCCTATTTCGAGAGGATCCGCGGAATTCACTGCTCTC
TTAAAAACCAGTCCCCATCTCCTACAGAGCAACCCGGACCTGATGCGTCT
GAGCTTCACTCACACAGGGGTCTGGCAGCCCAGGTTGGGAGACAGCAAGC
TCCTGGTCGTGGATGAAACTAACTGCAGCTGAGGAGACCACAGAGAGGTG
ACAGCTGGCTGGCCTGAAGAACTTAACTTTCCTTGGGCCCTGCCTTTCTT
GTTGACAGCTGCCTAGCACGCAAGAGGGAAGTGAGGTGGCAAAGTGTATG
TATGTAAGAAAAAAGAAGAAGAAAAACCCAAAGAGCTAACCGCAGTCTCA
GAGGCAAACGTCAGTGAAAAGATAAGATGCCACAGAAACCCATTCAGGAA
CCACAGCCACTTCTTAGAGGAAGACATTAAAAAGAAGCCACAACTCAAGG
TTCAAAGAGAGCTGAAAGAAAAACCGACGGAAGCCCCGACGACCTCACCT
TGTTCACCTTGGACAGGGGAAGCTGAGTTAAGAGTTTAAACTTCAAAAGG
CTCAGACTGTAAAGCAGCTGGGCAGGAAGCCCGGATGTGGCCTCCGACTA
CCAGGACATGTTGTGCGACCTCATGGCCCCTGGCCCTGGTGAGCCTTTCT
CTCCAATAATCTGGTGTCTTGGTTCCTGGTTGGTGGCGGTCTCCAAGGCC
AATTGTACCCCGCCCTTTCTT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGAGGTACCCAAGGCTCCTTCCACAGCA
CCACGCTTTGCACAGATTCTCAGTTCTGTGCAGGGGCAAGCACAGNTTCA
CGGCAGGCATCACCCTCCTCTACAAGGCCCCAGTCAGCGCTGGCTTTCAG
AAGAAGCCCTTCCTACCCAGAAGCCCCTGGTCCACGGGCTGAAATTCCTT
TCCAGNCTTTCTGGACTTTTGGCAGCAGTCGCACCAGGCAGCCCCTTACC
AAAGGAATTTGGCTGGCCCGGGGCCAGGGGTTGGCCCGGAAACCAAAAAA
CCCCACCCTCCGGAGGGGGGGAAAAAAGGTGGAATCCCCCCCTCCCCCCC
CTTCCCGNGTGTTTAATAGGAGGACATAAATAATAAAAATTTTTTTTTTT
GTTCTGCCTCCTGNCTTCGCATAAGCGTTGAAGTGCAAGNNGTAAGTAGC
ACNCAATTTGNTCAGGCCAACCTCGATACNNTAATTTATNTTCNTCTGCC
CNNTTTGTGAATATTATATNNNTAATATTNCTCTCCTNTTTTTTTGTTGT
GGCGTGCACACAAAAAAAAAAAAATAACCCACACAANNNGTTTGTGTGGG
GGGTTGGGACGGTGCTCCTTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_c10.b1 MSMg01no342_c10.b1 CHROMAT_FILE:
MSMg01no342_c10.b1 PHD_FILE: MSMg01no342_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:35 2005
         (505 letters)



>mm_chr8_124174043_124174947
          Length = 905

 Score =  878 bits (454), Expect = 0.0
 Identities = 487/498 (97%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattcactgctctcttaaaaaccagtccccatctcctacagagcaacccggacctgatg 67
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattcactgccctgttaaaaaccagtccccatctcctacagagcaacccggacctgatg 267

                                                                       
Query: 68  cgtctgagcttcactcacacaggggtctggcagcccaggttgggagacagcaagctcctg 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cgtctgagcttcactcacacaggggtctggcagcccaggttgggagacagcaagctcctg 327

                                                                       
Query: 128 gtcgtggatgaaactaactgcagctgaggagaccacagagaggtgacagctggctggcct 187
            ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ctcgtggatgaaactaaccgcagctgaggagaccacagagaggtgacagctggctggcct 387

                                                                       
Query: 188 gaagaacttaactttccttgggccctgcctttcttgttgacagctgcctagcacgcaaga 247
           ||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||
Sbjct: 388 gaagaacttaactttccttgggccctgcctttcttgttgacagttgcctcgcatgcaaga 447

                                                                       
Query: 248 gggaagtgaggtggcaaagtgtatgtatgtaagaaaaaagaagaagaaaaacccaaagag 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 448 gggaagtgaggtggcaaagtgtatgtatgtaagaaaaaagaagaagaaaaacccaaaaag 507

                                                                       
Query: 308 ctaaccgcagtctcagaggcaaacgtcagtgaaaagataagatgccacagaaacccattc 367
           ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 508 ctaaccgaagtctcagaggcaaacgtcagtgaaaagataagacgccacagaaacccattc 567

                                                                       
Query: 368 aggaaccacagccacttcttagaggaagacattaaaaagaagccacaactcaaggttcaa 427
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aggaaccacaaccacttcttagaggaagacattaaaaagaagccacaactcaaggttcaa 627

                                                                       
Query: 428 agagagctgaaagaaaaaccgacggaagccccgacgacctcaccttgttcaccttggaca 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 agagagctgaaagaaaaaccgacggaagccccgacgacctcaccttgttcaccttggaca 687

                             
Query: 488 ggggaagctgagttaaga 505
           ||||||||||||||||||
Sbjct: 688 ggggaagctgagttaaga 705


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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