BAC Information

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BAC

Clone NameMSMg01-343D07
Chromosome8 (Build37)
Map Location 94,015,643 - 94,016,012
singlet/doubletsinglet
Overlap geneAJ237917
Upstream geneLOC100041133, Chd9, LOC100041156, EG626231, Rbl2, Aktip, LOC667162, LOC100041222, Rpgrip1l
Downstream geneLOC100041254, LOC674324, LOC100040628, Irx3, 4933436C20Rik, Irx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343D07.T7 (MSMg01no343_d07.b1)MSMg01-343D07.TJ (MSMg01no343_d07.g1)
ACCAG456572AG456573
length779766
length of high quality
(start - end)
375 (38 - 412)359 (68 - 426)
definitionCHROMAT_FILE: MSMg01no343_d07.b1 PHD_FILE: MSMg01no343_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:57 2005CHROMAT_FILE: MSMg01no343_d07.g1 PHD_FILE: MSMg01no343_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCTA
CTGAGGATACATCCAGTGACAGTATCTTCAGGAACATCAGAGCCGGCCAG
TGGTAGACTTCCCGTTCTTAACCCTTGCATGAGCGAGAGCCTTCTAGTGC
CCAGTGTTAGGATGTGTGAGGGACACTCAGAAGACCGGCTGCCACCTCTG
TTCTAAACACAAGGGCAAAATCCCAGAAAATGTGACAGGAGCTAGGAAAT
GCCAAGTGTAAGTGTGCCGTCTCTCTTAACCTGTTAGTGTCCAGAGAGAA
AGCCTGAGATAATCAGGCAGGGTTTCTGTTTTCACCTTGACACCAAAGCA
TTTGACAGATTTTTGTCCATCTTCATTTAGTACACACATGCATGGCACAG
ATGCTCACACATGCATGGCACACACACGCATATGCATGGCACAGATGCGT
ACACATACATGGCTCAGACACTCATGCTTGGTACAGACACTCCCCTCTGC
TTGGCACATATGCTCACTCATGCCTGTGCTAAATGTTCTTTTCTTTTGGA
TCTACATTTCTTGCTCGGCGTATCCCCCTCTTGTTTCATCCCTCTCTCTG
TTTTTACATTATTCCACTTGGTTTAAAAACAAACCTTTTCTCTACTCCTT
TTCCTTTTGTCTTACCTCATTTTTCTTTTCTTAATTACTCTATTTATCTC
CTTGTGCCCCTTATTTTGCCTGTCTCTCCTCTTGTTTAAAACTTCTAAAT
CTCACCACCTCCCCCGTCACCCCACCTTT
AGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGTAGCTCAAAGCCAGCCTGGGCTATGTGGTAA
GACCTTGTCTATAAATAAATAAATAAATAAATAAATAAATAAATAAATAA
ATAAATAAATAAATAAATAAATAAATAAATAAATAAAAGCAGACCTCTCC
AGAGATTTAATGAAACATTTCTCAGCACCCACCCCTGTATCTCAGTATCT
CAGAAATAGCAAGTCTCTCTCTCTGTCTCTCTCTCCCTCTCTCTCTTTCA
CACACACACACACACACACACACACACACACACACAGAGAGAGAGAGAGA
GAGACAGAGACAGAGACAGAGAGACAGAGAGACAGAGAGAGAGTTTTCAA
TAAATACATGCAGAATGGCTGTTTCAAAGGTGAGATACAGTTGAGAAACA
TCAAGTAATAGCCCAAGTCGAGGTTTTCTACTTCGTAACCTTTTGAAGAT
TGTTTAAGCATTGTTGTTTTGAAAGTGTTTTTTAATGGAGCTTGTGTTTC
CTGGTTTACCTGGTGTGTCCCGTTTCTGGCCCCTCCCTACATACTCTTTC
CTTTTTATTATGTTCCTTTCGGTTTCCCCGTAACCATTTCTTCTCAATTA
TAAGTTTTTTTTTTTTCTTTTCTTTTTCTCGTTCCCTCTTTTTATTTTTT
CTATCCCTAACCTAGCTTTATTTCCTTTTTATACAACTCTCCTTCTTATA
TTATTTATATTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_d07.b1 MSMg01no343_d07.b1 CHROMAT_FILE:
MSMg01no343_d07.b1 PHD_FILE: MSMg01no343_d07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:57 2005
         (375 letters)



>mm_chr8_94015438_94016212
          Length = 775

 Score =  700 bits (362), Expect = 0.0
 Identities = 368/370 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctactgaggatacatccagtgacagtatcttcaggaacatcagagccggccagtg 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctactgaggatacatccagtgacagtatcttcaggaacatcagagccggccagtg 265

                                                                       
Query: 66  gtagacttcccgttcttaacccttgcatgagcgagagccttctagtgcccagtgttagga 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtagacttcccgttcttaacccttgcatgagcgagagccttctagtgcccagtgttagga 325

                                                                       
Query: 126 tgtgtgagggacactcagaagaccggctgccacctctgttctaaacacaagggcaaaatc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgtgtgagggacactcagaagaccggctgccacctctgttctaaacacaagggcaaaatc 385

                                                                       
Query: 186 ccagaaaatgtgacaggagctaggaaatgccaagtgtaagtgtgccgtctctcttaacct 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ccagaaaatgtgacaggagctaggaaatgccaagtgtaagtgtgccgtctctcttaacct 445

                                                                       
Query: 246 gttagtgtccagagagaaagcctgagataatcaggcagggtttctgttttcaccttgaca 305
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 446 gttagtgtccagagagaaagcctgagatagtcaggcagggtttctgttttcaccttgaca 505

                                                                       
Query: 306 ccaaagcatttgacagatttttgtccatcttcatttagtacacacatgcatggcacagat 365
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 506 ccaaagcatttgacagatttttgtccatcttcatttagtaaacacatgcatggcacagat 565

                     
Query: 366 gctcacacat 375
           ||||||||||
Sbjct: 566 gctcacacat 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)