BAC Information

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BAC

Clone NameMSMg01-343H07
Chromosome8 (Build37)
Map Location 59,921,199 - 59,921,589
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664948, BC088983, Fbxo8, LOC100040431, EG624433, LOC654355, LOC100040515, Hand2
Downstream geneScrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711, 4930431L04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343H07.T7 (MSMg01no343_h07.b1)MSMg01-343H07.TJ (MSMg01no343_h07.g1)
ACCAG456761AG456762
length824759
length of high quality
(start - end)		47 (63 - 109)391 (69 - 459)
definitionCHROMAT_FILE: MSMg01no343_h07.b1 PHD_FILE: MSMg01no343_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:18 2005CHROMAT_FILE: MSMg01no343_h07.g1 PHD_FILE: MSMg01no343_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATGCGGCCCTAAACGACTCCTATATCCACAGAAACCGCGGAATTCTCTCA
TTTCACTCTAAACTTCACCATGGAAACAGCATCTAGCAATGGCTACCAAG
AAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTACACCCCCAC
ACACAACTAAACCTCACCAACACACCTATACCCACCAACCAACAACAACC
ACTCCACACAAAACCTAACACAAAACCAAAACCACCACCCAAAAAAACAC
ACACACACCCCCCACACCCACAAACAAACACACTACCCACAAAAACACCT
CACCACAACAAATACACAACCCCACAACCAAACCCCCCACCCAAATAAAT
CCAACATCCTAACACACACCAAATAACACCCACCAAACCCCACACCCCAC
CACACCCACACCCAATTACCCCCCACTAACACAAACAAATACACCCTCCA
TACCCACCCACACACCACACACAACACCCACCACCAACCCCATCCACCCA
AACAACACACCACCACACCAACCTAACCCCCAACCCCAAACCCCAACTAT
ACCCCAAATTCACTCATTCAACACCACCCTAAACACACCCACCACACCCC
AACCCCCACACACAACAAACACAACAATCCTCACCCACCCAAAACAACAA
CATACCCTAAACCACACCAACTATACCACCCACACCTCACCCTCCAACCT
ACACACCAACCAACCAAAAACACTCAACTACAACCACCCATCACCAATCA
TAAACACCTCAAAATACCACCCACCACACTCTACCTCCATCAACCATACA
CACCTCCCCACTCACCACCATACN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGTGAGGGATAAGTTTTACGTCTCATCAAATG
ACACTGTAACACGCGTAGACTGTGTAGACCGTTACCAACTTTTCTCAATT
CCTGATGGAGCAAAGGCTCATGAGTGACTTGCTGCCTTCTAATGGAGCAT
ACAAATTCCTCACCCCATGTACCAGGAATGAAATACTTCTGTGGTTGAGT
CAGAGGTGAGCCTTGAGGCCTGGCTGCTAACCATGGCTCTGAAAGCCTTC
TCAGGTTGTCCAAGTACAGAGGTCCTTGAGGCTTTCCCTCCTGTTCAGGC
AAAGAAAGAAGTTCCTGGAGACAGTGCTGCATGGAATAAAGGGAACAAAA
GAGTCAAGATAGGTAGGTGGAAGAGGCCATACCCCTGCCATACCCCCCAT
CCCCACCAACAGAGAGGGAGAGAGAGAGAGAGGCATATAGAGGGCCCCCT
TTTTTCCCCCCCCCTTCTTTTTCTCCCCTTTTTTTTTTCTTCCTCCTCTC
CCCACTTTTTCATATCCTTCCACATATTCTTATCTTTACTAACTTTCCTT
CTTTTATTTATCTTCCTTACCTTTTTTCCCGTCATTGTTTTCATTCCCTC
CTACTCTTTACTTTCTTCACTTTCTCTCACTCCTCTTTTTTTTTCTACAT
CTCTCTTCCTTCCATATTTTACTTTTTTTCCCTCTATCTTCTTTCTCTTT
TTTTCTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_h07.g1 MSMg01no343_h07.g1 CHROMAT_FILE:
MSMg01no343_h07.g1 PHD_FILE: MSMg01no343_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:18 2005
         (391 letters)



>mm_chr8_59920999_59921789
          Length = 791

 Score =  741 bits (383), Expect = 0.0
 Identities = 389/391 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgagggataagttttacgtctcatcaaatgacactgtaacacgcgtagactgtgtaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgagggataagttttacgtctcatcaaatgacactgtaacacgcgtagactgtgtaga 260

                                                                       
Query: 61  ccgttaccaacttttctcaattcctgatggagcaaaggctcatgagtgacttgctgcctt 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 ccgttaccaacttttctcaattcctgatggagcaaaagctcatgagtgacttgctgcctt 320

                                                                       
Query: 121 ctaatggagcatacaaattcctcaccccatgtaccaggaatgaaatacttctgtggttga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctaatggagcatacaaattcctcaccccatgtaccaggaatgaaatacttctgtggttga 380

                                                                       
Query: 181 gtcagaggtgagccttgaggcctggctgctaaccatggctctgaaagccttctcaggttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtcagaggtgagccttgaggcctggctgctaaccatggctctgaaagccttctcaggttg 440

                                                                       
Query: 241 tccaagtacagaggtccttgaggctttccctcctgttcaggcaaagaaagaagttcctgg 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 tccaagtacagaggtccttgaggctttccctcctgttcaggcaaaggaagaagttcctgg 500

                                                                       
Query: 301 agacagtgctgcatggaataaagggaacaaaagagtcaagataggtaggtggaagaggcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agacagtgctgcatggaataaagggaacaaaagagtcaagataggtaggtggaagaggcc 560

                                          
Query: 361 atacccctgccataccccccatccccaccaa 391
           |||||||||||||||||||||||||||||||
Sbjct: 561 atacccctgccataccccccatccccaccaa 591


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 391
Length of database: 791
Length adjustment: 9
Effective length of query: 382
Effective length of database: 782
Effective search space:   298724
Effective search space used:   298724
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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